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Sample GSM1340468 Query DataSets for GSM1340468
Status Public on Mar 08, 2014
Title WT luminal rep 2
Sample type RNA
 
Source name WT luminal
Organism Mus musculus
Characteristics gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2+/+
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol not provided
 
Hybridization protocol not provided
Scan protocol not provided
Description W2_Luminal
Data processing The data were normalised using quantile normalization
 
Submission date Mar 05, 2014
Last update date Mar 08, 2014
Contact name Charlotte Kuperwasser
Phone 6176365644
Organization name Tufts University
Street address 75 Kneeland St
City Boston
ZIP/Postal code 02111
Country USA
 
Platform ID GPL6885
Series (1)
GSE55620 Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection P value

Data table
ID_REF VALUE Detection P value
ILMN_2896528 424.3489 0
ILMN_2721178 192.4632 0
ILMN_3033922 156.9204 0
ILMN_3092673 663.1581 0
ILMN_2816356 103.2949 0.08521304
ILMN_2808939 433.9171 0
ILMN_2634564 746.9067 0
ILMN_2737647 101.048 0.1165414
ILMN_2734484 220.8336 0
ILMN_2952292 119.6019 0.01002506
ILMN_2699078 155.3187 0
ILMN_1213681 229.9979 0
ILMN_2735413 96.44622 0.2756892
ILMN_2735415 96.66852 0.2593985
ILMN_2891688 292.3181 0
ILMN_2637698 196.0044 0
ILMN_2674228 96.81947 0.2481203
ILMN_2601546 92.75155 0.5225564
ILMN_1230831 100.3682 0.131579
ILMN_2848071 113.5469 0.01253133

Total number of rows: 25697

Table truncated, full table size 736 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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