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Sample GSM1340470

Query DataSets for GSM1340470

Status

Public on Mar 08, 2014

Title

WT basal rep 2

Sample type

RNA

Source name

WT basal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2+/+

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

W2_Basal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	273.204	0.001253133
ILMN_2721178	204.871	0.001253133
ILMN_3033922	152.9005	0.003759399
ILMN_3092673	672.9197	0
ILMN_2816356	126.6813	0.007518797
ILMN_2808939	236.5315	0.001253133
ILMN_2634564	497.8257	0
ILMN_2737647	100.2992	0.1441103
ILMN_2734484	145.0383	0.003759399
ILMN_2952292	154.1706	0.003759399
ILMN_2699078	163.4224	0.002506266
ILMN_1213681	249.0106	0.001253133
ILMN_2735413	92.15409	0.5689223
ILMN_2735415	92.36086	0.5551379
ILMN_2891688	209.4721	0.001253133
ILMN_2637698	161.8631	0.002506266
ILMN_2674228	94.89633	0.3421053
ILMN_2601546	101.09	0.1365915
ILMN_1230831	108.2581	0.05388471
ILMN_2848071	111.476	0.03383459

Total number of rows: 25697

Table truncated, full table size 790 Kbytes.

Supplementary data files not provided

Processed data included within Sample table