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Sample GSM1340476

Query DataSets for GSM1340476

Status

Public on Mar 08, 2014

Title

null luminal rep 1

Sample type

RNA

Source name

null luminal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Luminal
genotype/variation: SNAI2 null

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

N1_Luminal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	431.0188	0
ILMN_2721178	205.996	0
ILMN_3033922	149.6236	0.001253133
ILMN_3092673	662.6224	0
ILMN_2816356	138.4046	0.003759399
ILMN_2808939	361.3088	0
ILMN_2634564	704.5676	0
ILMN_2737647	102.7131	0.0839599
ILMN_2734484	175.4456	0.001253133
ILMN_2952292	143.2331	0.002506266
ILMN_2699078	224.2695	0
ILMN_1213681	316.4404	0
ILMN_2735413	90.44899	0.7619048
ILMN_2735415	93.39481	0.4699248
ILMN_2891688	255.1579	0
ILMN_2637698	178.2449	0.001253133
ILMN_2674228	96.55767	0.2581454
ILMN_2601546	91.87534	0.6115288
ILMN_1230831	100.6025	0.1177945
ILMN_2848071	104.0082	0.07017544

Total number of rows: 25697

Table truncated, full table size 752 Kbytes.

Supplementary data files not provided

Processed data included within Sample table