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Sample GSM1340485

Query DataSets for GSM1340485

Status

Public on Mar 08, 2014

Title

null basal rep 2

Sample type

RNA

Source name

null basal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2 null

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

N2_Basal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	274.0964	0
ILMN_2721178	198.7051	0.001253133
ILMN_3033922	181.948	0.001253133
ILMN_3092673	695.4395	0
ILMN_2816356	113.8199	0.02631579
ILMN_2808939	283.6439	0
ILMN_2634564	431.9248	0
ILMN_2737647	104.5234	0.0989975
ILMN_2734484	121.2881	0.0112782
ILMN_2952292	133.4297	0.007518797
ILMN_2699078	205.7852	0.001253133
ILMN_1213681	126.5838	0.01002506
ILMN_2735413	101.4506	0.1491228
ILMN_2735415	88.69275	0.8847118
ILMN_2891688	159.35	0.003759399
ILMN_2637698	249.3298	0.001253133
ILMN_2674228	90.48605	0.7456141
ILMN_2601546	114.9293	0.02130326
ILMN_1230831	94.26781	0.4047619
ILMN_2848071	108.8495	0.05639098

Total number of rows: 25697

Table truncated, full table size 774 Kbytes.

Supplementary data files not provided

Processed data included within Sample table