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Sample GSM1340486

Query DataSets for GSM1340486

Status

Public on Mar 08, 2014

Title

null basal rep 3

Sample type

RNA

Source name

null basal

Organism

Mus musculus

Characteristics

gender: Female
tissue type: mammary gland
cell population: Basal
genotype/variation: SNAI2 null

Extracted molecule

total RNA

Extraction protocol

RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

Label

biotin

Label protocol

not provided

Hybridization protocol

not provided

Scan protocol

not provided

Description

N3_Basal

Data processing

The data were normalised using quantile normalization

Submission date

Mar 05, 2014

Last update date

Mar 08, 2014

Contact name

Charlotte Kuperwasser

Phone

6176365644

Organization name

Tufts University

Street address

75 Kneeland St

City

Boston

ZIP/Postal code

02111

Country

USA

Platform ID

GPL6885

Series (1)

GSE55620

Genome Wide Expression of Mammary Epithelial Populations in Slug (SNAI2) WT vs Slug Null Mice

Data table header descriptions
ID_REF
VALUE	quantile normalized signal
Detection P value

Data table
ID_REF	VALUE	Detection P value
ILMN_2896528	301.8706	0
ILMN_2721178	208.4755	0.001253133
ILMN_3033922	169.0282	0.001253133
ILMN_3092673	586.8646	0
ILMN_2816356	99.54497	0.1390978
ILMN_2808939	311.8134	0
ILMN_2634564	483.9527	0
ILMN_2737647	100.7491	0.1152882
ILMN_2734484	118.4593	0.01002506
ILMN_2952292	134.9113	0.006265664
ILMN_2699078	215.4988	0.001253133
ILMN_1213681	167.503	0.001253133
ILMN_2735413	89.66939	0.7932331
ILMN_2735415	92.4559	0.5200501
ILMN_2891688	147.7525	0.001253133
ILMN_2637698	252.0766	0.001253133
ILMN_2674228	104.3328	0.06641604
ILMN_2601546	110.9404	0.02380952
ILMN_1230831	96.59413	0.2343358
ILMN_2848071	117.5673	0.01002506

Total number of rows: 25697

Table truncated, full table size 775 Kbytes.

Supplementary data files not provided

Processed data included within Sample table