NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM134819 Query DataSets for GSM134819
Status Public on Aug 06, 2007
Title Primary human neuroblastoma cS035
Sample type genomic
 
Channel 1
Source name cS035
Organism Homo sapiens
Characteristics Primary human neuroblastoma
Extracted molecule genomic DNA
Label Cy3
 
Channel 2
Source name normal human reference genomic DNA
Organism Homo sapiens
Characteristics normal human reference genomic DNA
Extracted molecule genomic DNA
Label Cy5
 
 
Description The 500-ng aliquots of tumors and reference DNAs were labeled by random priming with each Cy3-dCTP and Cy5-dCTP (Amersham Pharmacia, Piscataway, NJ). Hybridization was performed as previously reported [Pinkel D. et al. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat Genet 1998;20:207-11.].
Data processing UCSF Spot and UCSF Sproc programs to analyze values for spotted clones [Jain A.N. et al. Fully automatic quantification of microarray image data. Genome Res 2002;12:325-32.] were used.
 
Submission date Sep 06, 2006
Last update date Aug 06, 2007
Contact name Akira Nakagawara
Organization name Chiba Cancer Center Research Institute
Street address 666-2 Nitona, Chuoh-ku
City Chiba
ZIP/Postal code 260-8717
Country Japan
 
Platform ID GPL4242
Series (1)
GSE5784 Array-based comparative genomic hybridization analysis of primary neuroblastoma

Data table header descriptions
ID_REF
VALUE mean of log2 ratio

Data table
ID_REF VALUE
HumArray2H11_N30 -0.165028
HumArray2H11_C9 0.04512
HumArray2H10_N30 -0.02978
HumArray2H10_B18 0.018857
HumArray2H10_Q30 0.019732
HumArray2H10_T30 0.090013
HumArray2H10_B19 -0.018009
HumArray2H10_W30 0.036251
HumArray2H9_C14 0.092221
HumArray2H9_F14 0.072531
HumArray2H9_I14 0.020522
HumArray2H9_A23 0.086904
HumArray2H9_L14 0.072557
HumArray2H9_O14 0.0364
HumArray2H11_L8 0.005632
HumArray2H9_B4 0.085281
HumArray2H10_E19 -0.022055
HumArray2H9_U14 -0.029683
HumArray2H9_R14 0.076118
HumArray2H9_X14 0.08716

Total number of rows: 2464

Table truncated, full table size 59 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.