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Sample GSM134906 Query DataSets for GSM134906
Status Public on Jan 03, 2007
Title H1993 Low dose 5-aza treatment group (100 nM)
Sample type RNA
 
Source name NSCLC cell line
Organism Homo sapiens
Characteristics See pulication for details.
Treatment protocol Low dose treatment group (100 nM). 5-aza-2'-deoxycytidine qod for 6 days.
Growth protocol See pulication for details.
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol Affymetrix
 
Hybridization protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Scan protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Description H1993 Low dose 5-aza treatment group (100 nM)
Data processing Raw signal data without normalization
 
Submission date Sep 06, 2006
Last update date Aug 28, 2018
Contact name David S Shames
E-mail(s) [email protected]
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL570
Series (1)
GSE5816 A Genome-wide Screen for Hypermethylated Genes in Lung Cancer
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE H1993 AzaL Signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 510.9
AFFX-BioB-M_at 630.6
AFFX-BioB-3_at 410
AFFX-BioC-5_at 1496.6
AFFX-BioC-3_at 1854.3
AFFX-BioDn-5_at 2801.2
AFFX-BioDn-3_at 8726.9
AFFX-CreX-5_at 17466.2
AFFX-CreX-3_at 21252.4
AFFX-DapX-5_at 22.2
AFFX-DapX-M_at 31
AFFX-DapX-3_at 5.7
AFFX-LysX-5_at 1.2
AFFX-LysX-M_at 5
AFFX-LysX-3_at 17.6
AFFX-PheX-5_at 3.7
AFFX-PheX-M_at 1.2
AFFX-PheX-3_at 11.2
AFFX-ThrX-5_at 5.5
AFFX-ThrX-M_at 31.7

Total number of rows: 54675

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM134906.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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