NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM134946 Query DataSets for GSM134946
Status Public on Nov 12, 2006
Title H460 High dose treatment group (1000 nM).
Sample type RNA
 
Source name NSCLC cell line
Organism Homo sapiens
Characteristics See publication for details.
Treatment protocol H460 High dose treatment group (1000 nM). 5-aza-2'-deoxycytidine qod for 6 days.
Growth protocol See publication for details.
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
Label protocol Affymetrix
 
Hybridization protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Scan protocol please see the Southwestern Medical Center Microarray Core Facility website for details
Description H460 High dose treatment group (1000 nM).
Data processing Raw signal data without normalization
 
Submission date Sep 06, 2006
Last update date Aug 28, 2018
Contact name David S Shames
E-mail(s) [email protected]
Phone 650-225-7559
Organization name Genentech Inc
Department Oncology Biomarker Development
Lab Shames
Street address 1 DNA Way
City South San Francisco
State/province CA
ZIP/Postal code 94080
Country USA
 
Platform ID GPL570
Series (1)
GSE5816 A Genome-wide Screen for Hypermethylated Genes in Lung Cancer
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE H460-AzaH Signal

Data table
ID_REF VALUE
AFFX-BioB-5_at 927.9
AFFX-BioB-M_at 1699.1
AFFX-BioB-3_at 1022.8
AFFX-BioC-5_at 3289.6
AFFX-BioC-3_at 4081.6
AFFX-BioDn-5_at 6809.8
AFFX-BioDn-3_at 18453.2
AFFX-CreX-5_at 34277.9
AFFX-CreX-3_at 42209.8
AFFX-DapX-5_at 41.2
AFFX-DapX-M_at 23.8
AFFX-DapX-3_at 5.4
AFFX-LysX-5_at 6.5
AFFX-LysX-M_at 40.3
AFFX-LysX-3_at 2.4
AFFX-PheX-5_at 4.5
AFFX-PheX-M_at 2.2
AFFX-PheX-3_at 62.1
AFFX-ThrX-5_at 31.6
AFFX-ThrX-M_at 29.7

Total number of rows: 54675

Table truncated, full table size 866 Kbytes.




Supplementary file Size Download File type/resource
GSM134946.CEL.gz 8.2 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap