|
| Status |
Public on Apr 30, 2014 |
| Title |
400.75 |
| Sample type |
SRA |
| |
|
| Source name |
polyp
|
| Organism |
Acropora aff. hyacinthus sp. E JTL-2012 |
| Characteristics |
pool of origin: 300
pool transplanted into: 400
|
| Treatment protocol |
All colonies were sampled within 10 minutes of noon on August 30, 2011
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Ambion RNAqueous Kit
Illumina TruSeq kits, Illumina barcoded: 12 per lane
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
transplanted Aug 3, 2010. Sampled in situ Aug 30, 2011
|
| Data processing |
Mapped using bwa (fraction missing alignments = 0.005)
assembly as in Barshis et al. 2013
Normalization was performed with DESeq using default parameters
filtered so mean # mapped reads>5
Genome_build: de novo built assembly described in Barshis et al. 2013
Supplementary_files_format_and_content: Text file containing normalized mapped read counts
|
| |
|
| Submission date |
Mar 27, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Stephen Palumbi |
| E-mail(s) |
[email protected]
|
| Phone |
831-655-6214
|
| Organization name |
Stanford University
|
| Department |
Biology
|
| Lab |
Hopkins Marine Station
|
| Street address |
120 Ocean View Blvd
|
| City |
Pacific Grove |
| State/province |
CA |
| ZIP/Postal code |
93950 |
| Country |
USA |
| |
|
| Platform ID |
GPL18475 |
| Series (1) |
| GSE56278 |
Mechanisms of coral response to climate change |
|
| Relations |
| BioSample |
SAMN02709459 |
| SRA |
SRX501942 |
