|
| Status |
Public on Aug 08, 2014 |
| Title |
SEQC_AFX_USF_A_4_PRV |
| Sample type |
RNA |
| |
|
| Source name |
Universal Human Reference RNA (UHRR) from Stratagene
|
| Organism |
Homo sapiens |
| Characteristics |
seqc sample: A
|
| Extracted molecule |
total RNA |
| Extraction protocol |
none
|
| Label |
Biotin
|
| Label protocol |
Affymetrix standard array label protocol
|
| |
|
| Hybridization protocol |
Affymetrix standard array hyb protocol
|
| Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner M10.
|
| Data processing |
Probe signal are processed by gcrma and rma algorithms to probe set level for GPL17930 and GPL16043 respectively and further summarized to gene level using median when multiple probe sets exist for a gene
Series supplementary files GSE56457_SEQC_USF_GEOSub_HuGene2.txt and GSE56457_SEQC_USF_GEOSub_PrimeView.txt include log2 transformed intensity
|
| |
|
| Submission date |
Apr 02, 2014 |
| Last update date |
Aug 08, 2014 |
| Contact name |
Leming Shi |
| E-mail(s) |
[email protected]
|
| Phone |
+86-18616827008
|
| Organization name |
Fudan University
|
| Department |
School of Life Sciences
|
| Lab |
Center for Pharmacogenomics
|
| Street address |
2005 Songhu Road
|
| City |
Shanghai |
| ZIP/Postal code |
200438 |
| Country |
China |
| |
|
| Platform ID |
GPL16043 |
| Series (2) |
| GSE47792 |
SEQC Project |
| GSE56457 |
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequence Quality Control consortium |
|
