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GEO accession:
Sample GSM136328
Query DataSets for GSM136328
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #40
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIIA, Clinical IBC: No
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.424799363
1053_at
4.732080863
117_at
6.447978144
121_at
8.344987747
1255_g_at
3.964102034
1294_at
8.271911793
1316_at
6.841930458
1320_at
4.555412736
1405_i_at
6.708504641
1431_at
3.869102514
1438_at
6.263226235
1487_at
7.25328005
1494_f_at
6.573878592
1598_g_at
9.877411024
160020_at
7.618891369
1729_at
8.069937639
1773_at
5.240326755
177_at
5.302214756
179_at
8.442047779
1861_at
5.539374575
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136328.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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