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GEO accession:
Sample GSM136336
Query DataSets for GSM136336
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #48
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: U, ER: NEG, Her2Neu: U, Stage: IIIA, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.270981123
1053_at
4.962019486
117_at
6.243099686
121_at
8.223886217
1255_g_at
4.035477949
1294_at
8.52847852
1316_at
6.39177489
1320_at
4.807963735
1405_i_at
6.973093503
1431_at
4.013324851
1438_at
6.676240809
1487_at
6.955695609
1494_f_at
6.766180249
1598_g_at
10.52262326
160020_at
7.594592992
1729_at
7.855708809
1773_at
4.97874234
177_at
4.957345042
179_at
8.530614329
1861_at
5.685533447
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136336.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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