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GEO accession:
Sample GSM136337
Query DataSets for GSM136337
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #49
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: IBC
status: Deceased
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: U, Stage: IIIB, Clinical IBC: Yes
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
8.87360748
1053_at
4.87907655
117_at
6.085466203
121_at
8.131703862
1255_g_at
4.04378651
1294_at
8.835797147
1316_at
7.284453232
1320_at
4.485844559
1405_i_at
5.0202295
1431_at
3.935659857
1438_at
6.343706441
1487_at
7.351191589
1494_f_at
6.487653096
1598_g_at
10.66003909
160020_at
7.54124797
1729_at
8.040635291
1773_at
4.945135918
177_at
5.368989723
179_at
8.481037517
1861_at
5.839385885
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136337.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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