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GEO accession:
Sample GSM136340
Query DataSets for GSM136340
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #2
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 2
race: African American
tnm_stage: IIA
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIA
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.556395632
1053_at
5.217147159
117_at
6.221713942
121_at
8.09796446
1255_g_at
4.0497627
1294_at
9.052047137
1316_at
6.377889811
1320_at
4.671880573
1405_i_at
9.274023871
1431_at
3.942783656
1438_at
6.506623083
1487_at
7.299506516
1494_f_at
6.472709696
1598_g_at
10.64916483
160020_at
7.534174413
1729_at
8.500671287
1773_at
4.996510025
177_at
5.109895226
179_at
8.690973325
1861_at
5.620940866
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136340.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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