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GEO accession:
Sample GSM136351
Query DataSets for GSM136351
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #11
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 11
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: NEG, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.983538693
1053_at
5.079301062
117_at
6.185403486
121_at
8.005871648
1255_g_at
3.881026108
1294_at
7.813639335
1316_at
6.021142292
1320_at
4.604639119
1405_i_at
8.336160471
1431_at
3.852668399
1438_at
6.18533626
1487_at
7.084909881
1494_f_at
6.16356103
1598_g_at
10.02286951
160020_at
7.465017402
1729_at
8.095331979
1773_at
4.963025664
177_at
5.179888744
179_at
8.259297222
1861_at
5.481764594
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136351.CEL.gz
3.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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