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GEO accession:
Sample GSM136358
Query DataSets for GSM136358
Status
Public on Sep 30, 2007
Title
LCM stroma sample from patient #19
Sample type
RNA
Source name
human breast cancer stroma
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 19
race: African American
tnm_stage: IIB
er_status: NEG
tissue: Stroma
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: NEG, Her2Neu: POS, Stage: IIB
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
9.676360891
1053_at
5.034747878
117_at
6.444137191
121_at
7.936213797
1255_g_at
3.872101974
1294_at
7.970500599
1316_at
6.487240244
1320_at
4.66008895
1405_i_at
7.516751965
1431_at
3.808490878
1438_at
6.813505551
1487_at
6.97721381
1494_f_at
6.471119738
1598_g_at
10.46863038
160020_at
7.415614406
1729_at
8.223368834
1773_at
5.049331194
177_at
5.056868369
179_at
8.387613124
1861_at
5.501865227
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136358.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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