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GEO accession:
Sample GSM136395
Query DataSets for GSM136395
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #9
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 9
race: European American
tnm_stage: IIA
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIA, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.81232146
1053_at
5.751671922
117_at
6.740114938
121_at
8.47137279
1255_g_at
4.088898616
1294_at
8.015751638
1316_at
6.491100161
1320_at
4.870513976
1405_i_at
7.19168209
1431_at
4.411404562
1438_at
7.138143589
1487_at
7.692436353
1494_f_at
6.807176067
1598_g_at
9.736532092
160020_at
8.028034018
1729_at
7.941323502
1773_at
5.385110584
177_at
5.139268715
179_at
8.990415018
1861_at
5.285911017
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136395.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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