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GEO accession:
Sample GSM136397
Query DataSets for GSM136397
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #13
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Alive
patient_id: 13
race: European American
tnm_stage: IIB
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: POS, Her2Neu: NEG, Stage: IIB, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.81920319
1053_at
5.681801691
117_at
6.402396038
121_at
8.400212707
1255_g_at
4.34205237
1294_at
7.788870971
1316_at
6.682788485
1320_at
4.915999701
1405_i_at
6.509924306
1431_at
4.1839564
1438_at
6.68290815
1487_at
7.506574635
1494_f_at
6.785615398
1598_g_at
10.48400566
160020_at
7.990943426
1729_at
8.338854104
1773_at
5.102453555
177_at
5.290055732
179_at
8.899551533
1861_at
5.530786664
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136397.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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