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GEO accession:
Sample GSM136409
Query DataSets for GSM136409
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #22
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 22
race: European American
tnm_stage: IIB
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.66930406
1053_at
5.867969751
117_at
6.485272518
121_at
8.286314534
1255_g_at
4.185973213
1294_at
7.936453925
1316_at
6.614483335
1320_at
5.193593143
1405_i_at
6.438456774
1431_at
4.410366897
1438_at
7.079494159
1487_at
7.629524368
1494_f_at
6.806465904
1598_g_at
9.916066115
160020_at
7.615276231
1729_at
7.918688545
1773_at
5.323512973
177_at
5.192117944
179_at
8.754536132
1861_at
5.854020854
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136409.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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