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GEO accession:
Sample GSM136414
Query DataSets for GSM136414
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #27
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 27
race: African American
tnm_stage: IIB
er_status: POS
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: No, ER: POS, Her2Neu: NEG, Stage: IIB, Cyclin E: NEG
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.79280163
1053_at
5.646109078
117_at
6.504424305
121_at
8.327301576
1255_g_at
4.229090084
1294_at
8.058090857
1316_at
6.767197904
1320_at
4.891173333
1405_i_at
7.22569251
1431_at
4.064033318
1438_at
6.806821355
1487_at
7.584329305
1494_f_at
6.701950572
1598_g_at
9.676098944
160020_at
7.912581374
1729_at
8.324865092
1773_at
5.139181746
177_at
5.126095685
179_at
8.872173978
1861_at
5.31096861
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136414.CEL.gz
3.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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