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GEO accession:
Sample GSM136419
Query DataSets for GSM136419
Status
Public on Sep 30, 2007
Title
LCM tumor epithelium sample from patient #35
Sample type
RNA
Source name
human breast cancer tumor epithelium
Organism
Homo sapiens
Characteristics
diagnosis: non-IBC
status: Deceased
patient_id: 35
race: European American
tnm_stage: IIB
er_status: NEG
tissue: Tumor
Extracted molecule
total RNA
Extraction protocol
PicoPure kit (Arcturus)
Label
biotin
Label protocol
Small Sample Labeling Protocol vII from Affymetrix
Hybridization protocol
Standard Affy protocol
Scan protocol
Standard Affy protocol
Description
Chemo: Yes, ER: NEG, Her2Neu: POS, Stage: IIB, Cyclin E: POS
Data processing
RMA
Submission date
Sep 15, 2006
Last update date
Feb 17, 2016
Contact name
Stefan Ambs
Organization name
NCI
Lab
LHC
Street address
37 Convent Dr Bldg 37 Room 3050
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL96
Series (1)
GSE5847
Tumor and stroma from breast by LCM
Relations
Reanalyzed by
GSE47561
Data table header descriptions
ID_REF
Affy ID
VALUE
RMA log 2 expression levels
Data table
ID_REF
VALUE
1007_s_at
10.88886813
1053_at
6.216525682
117_at
6.494860837
121_at
8.691069219
1255_g_at
4.290218763
1294_at
7.482399611
1316_at
6.332969075
1320_at
5.077050225
1405_i_at
5.465128485
1431_at
4.157864771
1438_at
7.037725868
1487_at
7.7978039
1494_f_at
6.690069387
1598_g_at
9.392927076
160020_at
7.722072965
1729_at
8.869127173
1773_at
5.342517729
177_at
5.218281211
179_at
8.927898389
1861_at
5.866934487
Total number of rows:
22283
Table truncated, full table size
496 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM136419.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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