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Sample GSM136554 Query DataSets for GSM136554
Status Public on Jun 05, 2007
Title Microarray analysis of NL and PCOS oocytes (P3)
Sample type RNA
 
Source name MII arrested oocyte
Organism Homo sapiens
Characteristics MII-arrested oocyte collected from a PCOS woman undergoing gonadotropin-releasing hormone (GnRH) analog/ recombinant human (rh) follicle stimulating hormone (FSH) therapy for IVF. A MII oocyte was defined by one polar body in the perivitelline space and no visible nuclear structure in the cytoplasm
Extracted molecule total RNA
Extraction protocol Trizol
Label biotin
 
Description Previous microarray analyses have demonstrated that whole ovaries and isolated theca cells from normal and PCOS women have unique gene expression profiles. PCOS follicles have elevated androgen levels before and after GnRH analog/rhFSH therapy for IVF and contain excess amounts of insulin that are positively correlated with adiposity. Taken together, these studies suggest that the altered PCOS hormonal milieu and/or intrinsic abnormalities might alter gene expression in the PCOS oocyte which could impact oocyte developmental competence. To this end, we compared the gene expression profiles of normal and PCOS oocytes using Affymetrix microarray chips.
Data processing MAS5.0
 
Submission date Sep 15, 2006
Last update date Aug 28, 2018
Contact name Jennifer R Wood
E-mail(s) [email protected]
Phone 402-472-6437
Fax 402-472-6362
Organization name University of Nebraska
Department Animal Science
Lab Wood
Street address 3800 Fair St.
City Lincoln
State/province NE
ZIP/Postal code 68583-0908
Country USA
 
Platform ID GPL570
Series (1)
GSE5850 Microarray analysis of NL and PCOS oocytes
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE fluorescence intensity normalized to TGT150
ABS_CALL Present, Absent, or Marginal Call
DETECTION P-VALUE statistical analysis of detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1405.5 P 0.000044
AFFX-BioB-M_at 2042.6 P 0.000052
AFFX-BioB-3_at 1880.3 P 0.00007
AFFX-BioC-5_at 3997.1 P 0.00006
AFFX-BioC-3_at 2035.5 P 0.000044
AFFX-BioDn-5_at 3853.4 P 0.000044
AFFX-BioDn-3_at 12868.7 P 0.000044
AFFX-CreX-5_at 39252.2 P 0.000052
AFFX-CreX-3_at 40388.7 P 0.000044
AFFX-DapX-5_at 63.3 A 0.195266
AFFX-DapX-M_at 10.1 A 0.973889
AFFX-DapX-3_at 9.6 A 0.966323
AFFX-LysX-5_at 80.7 M 0.054213
AFFX-LysX-M_at 7.6 A 0.834139
AFFX-LysX-3_at 6 A 0.969024
AFFX-PheX-5_at 57 A 0.287743
AFFX-PheX-M_at 4.2 A 0.891021
AFFX-PheX-3_at 59.6 A 0.327079
AFFX-ThrX-5_at 5.3 A 0.971554
AFFX-ThrX-M_at 11.2 A 0.904333

Total number of rows: 54675

Table truncated, full table size 1411 Kbytes.




Supplementary file Size Download File type/resource
GSM136554.CEL.gz 7.5 Mb (ftp)(http) CEL
GSM136554.EXP.gz 371 b (ftp)(http) EXP
Processed data included within Sample table

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