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Sample GSM136680 Query DataSets for GSM136680
Status Public on Sep 19, 2006
Title Livers of mice fed an atherogenic diet for 24 weeks
Sample type RNA
 
Channel 1
Source name Livers of mice fed a standard chow for 24 weeks
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Gender: Male
Livers of mice fed a standard chow for 24 weeks
Extracted molecule total RNA
Label Cy3
 
Channel 2
Source name Livers of mice fed an atherogenic diet for 24 weeks
Organism Mus musculus
Characteristics Strain: C57Bl/6J
Gender: Male
Livers of mice fed an atherogenic (Ath) diet for 24 weeks. The Ath diet contains (by weight) 14% fat, 1.25% cholesterol, and 0.5% sodium cholate.

Extracted molecule total RNA
Label Cy5
 
 
Description RNA amplified before cDNA synthesis
Data processing Lowess normalization (GeneSpring software)
 
Submission date Sep 16, 2006
Last update date Sep 19, 2006
Contact name Naoto Matsuzawa-Nagata
E-mail(s) [email protected]
Phone +81-76-265-2000
Fax +81-76-234-4280
Organization name Kanazawa University Graduate School of Medical Science
Department Medicinal Infomation
Street address 13-1 Takara-machi
City Kanazawa
State/province Ishikawa
ZIP/Postal code 920-8641
Country Japan
 
Platform ID GPL1292
Series (1)
GSE5852 Livers of mice fed an atherogenic diet for 6 or 24 weeks

Data table header descriptions
ID_REF
FLAG Quality of spot (0: good, -50: bad)
VALUE Log10 (Cy5/Cy3), but with flagged values removed
CH1_SIG Signal intensity of Cy3
CH1_BKD Background intensity of Cy3
CH2_SIG Signal intensity of Cy5
CH2_BKD Background intensity of Cy5

Data table
ID_REF FLAG VALUE CH1_SIG CH1_BKD CH2_SIG CH2_BKD
AGmmA010101 0 0.067 1157 368 1191 270
AGmmA010102 0 0.388 729 364 1335 443
AGmmA010103 0 0.105 1052 383 1112 261
AGmmA010104 0 -0.013 736 377 590 242
AGmmA010105 0 0.227 888 405 1085 269
AGmmA010106 0 0.018 1721 510 1572 309
AGmmA010107 0 0.087 555 359 493 253
AGmmA010108 0 0.116 774 354 800 252
AGmmA010109 0 0.239 1613 338 2434 221
AGmmA010110 0 0.05 1980 324 2069 209
AGmmA010111 0 0.301 18987 344 37518 231
AGmmA010112 0 0.25 507 310 561 211
AGmmA010113 0 -0.34 5111 369 2441 271
AGmmA010114 0 0.303 834 379 1277 363
AGmmA010115 0 0.231 4230 393 6800 261
AGmmA010116 0 0.27 1961 389 3183 252
AGmmA010117 0 0.028 36141 447 38327 282
AGmmA010118 0 0.09 2583 510 2868 315
AGmmA010119 0 0.199 1771 364 2479 253
AGmmA010120 0 0.135 768 359 815 256

Total number of rows: 28845

Table truncated, full table size 1050 Kbytes.




Supplementary data files not provided

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