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Sample GSM1379495 Query DataSets for GSM1379495
Status Public on May 07, 2014
Title female larvae replicate 1 [mRNA]
Sample type RNA
 
Source name female third instar Drosophila larvae
Organism Drosophila melanogaster
Characteristics Sex: female
developmental stage: larvae
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL1322
Series (2)
GSE57320 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [mRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
1616608_a_at 10.20194798
1622892_s_at 8.275738916
1622893_at 7.199982589
1622894_at 6.646370425
1622895_at 8.05425202
1622896_at 10.26360595
1622897_at 5.980988708
1622898_a_at 8.27980152
1622899_at 4.689461676
1622900_at 4.280604809
1622901_at 6.80184475
1622902_at 8.554842493
1622903_s_at 8.260804589
1622904_at 6.329975732
1622905_at 4.799123646
1622906_at 9.678362556
1622907_at 9.488185427
1622908_a_at 10.08926913
1622909_at 10.48241126
1622910_at 4.110929327

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.




Supplementary file Size Download File type/resource
GSM1379495_LF1.M.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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