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Sample GSM1379498 Query DataSets for GSM1379498
Status Public on May 07, 2014
Title male larvae replicate 2 [mRNA]
Sample type RNA
 
Source name male third instar Drosophila larvae
Organism Drosophila melanogaster
Characteristics Sex: male
developmental stage: larvae
Treatment protocol Flies laid in staggered vials and larvae, pupae and adults samples collected at the same time from vials at the right stage of development. 10 individuals included in each biological replicate collected.
Growth protocol LHm outbred population kept at 25oC
Extracted molecule total RNA
Extraction protocol ambion miRvana total RNA extraction kit used according to manufacturer's protocol
Label biotin
Label protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Scan protocol Affymetrix One-Cycle Target Labeling (Expression Analysis Technical Manual, 2001, Affymetrix).
Description gene expression data from LHm outbred population
Data processing RMA standard
 
Submission date May 06, 2014
Last update date May 07, 2014
Contact name Fiona C Ingleby
Organization name University of Sussex
Department School of Biology
Street address John Maynard Smith Building
City Falmer
ZIP/Postal code BN1 9QG
Country United Kingdom
 
Platform ID GPL1322
Series (2)
GSE57320 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults [mRNA]
GSE57322 Sex-specific mRNA and miRNA expression data from Drosophila larvae, pupae and adults

Data table header descriptions
ID_REF
VALUE As provided by affy package, R 3.0.2, Bioconductor 2.2

Data table
ID_REF VALUE
1616608_a_at 9.808669814
1622892_s_at 8.546215091
1622893_at 6.571294488
1622894_at 6.415836129
1622895_at 8.042252261
1622896_at 10.50338235
1622897_at 5.365731594
1622898_a_at 8.393567197
1622899_at 4.300163923
1622900_at 3.770758099
1622901_at 5.711329983
1622902_at 8.472474487
1622903_s_at 8.080565302
1622904_at 5.960870199
1622905_at 3.948696754
1622906_at 9.534821845
1622907_at 9.245064299
1622908_a_at 9.916342749
1622909_at 10.59370571
1622910_at 3.774475849

Total number of rows: 18952

Table truncated, full table size 432 Kbytes.




Supplementary file Size Download File type/resource
GSM1379498_LM2.M.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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