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| Status |
Public on Aug 08, 2007 |
| Title |
ApoE-/+, offspring hypercholesterolemic ApoE-/- mother, wt father LUMC_HKG_MOUSE_430_2-4 |
| Sample type |
RNA |
| |
|
| Source name |
carotic artery
|
| Organism |
Mus musculus |
| Characteristics |
genotype/variation (offspring): ApoE-/+
cross: hypercholesterolemic ApoE-/- mother, wt father
|
| Biomaterial provider |
Anatomy, Fanneke Alkemade
|
| Treatment protocol |
Disection, immediate storage in liquid nitrogen
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNAqueous-Micro
|
| Label |
Biotin
|
| Label protocol |
2 cycle
AmbionMessageAmpIIaRNAAmplification kit, oligodT
AmbionMessageAmpII-Biotin Enhanced
|
| |
|
| Hybridization protocol |
Affymetrix standard protocol
|
| Scan protocol |
Affymetrix standard protocol
|
| Description |
ApoE-/+, offspring hypercholesterolemic ApoE-/- mother, wt father
|
| Data processing |
MAS5, GCOS
|
| |
|
| Submission date |
Oct 25, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Anja Schiel |
| E-mail(s) |
[email protected]
|
| Organization name |
Leiden University Medical Center
|
| Department |
Human Clinical Genetics
|
| Lab |
Frants
|
| Street address |
Einthovenweg 20
|
| City |
Leiden |
| ZIP/Postal code |
2300RC |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE6134 |
Offsprings of crosses between hypercholesterolemic and normocholesterolemic parents LUMC-HKG-ApoE-Atherosclerosis |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
as derived by MAS5 |
| ABS_CALL |
present absent as MAS5 |
| DETECTION P-VALUE |
as derived by MAS5 |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
180.1 |
P |
0.002023 |
| AFFX-BioB-M_at |
240.6 |
P |
4.4e-05 |
| AFFX-BioB-3_at |
138.3 |
P |
0.002275 |
| AFFX-BioC-5_at |
542.9 |
P |
4.4e-05 |
| AFFX-BioC-3_at |
566.5 |
P |
4.4e-05 |
| AFFX-BioDn-5_at |
1034 |
P |
4.4e-05 |
| AFFX-BioDn-3_at |
2277 |
P |
6e-05 |
| AFFX-CreX-5_at |
5659.1 |
P |
5.2e-05 |
| AFFX-CreX-3_at |
6565.9 |
P |
4.4e-05 |
| AFFX-DapX-5_at |
2 |
A |
0.559354 |
| AFFX-DapX-M_at |
2.1 |
A |
0.659339 |
| AFFX-DapX-3_at |
1.2 |
A |
0.891021 |
| AFFX-LysX-5_at |
4.4 |
A |
0.396911 |
| AFFX-LysX-M_at |
2.2 |
A |
0.814869 |
| AFFX-LysX-3_at |
6.8 |
A |
0.425962 |
| AFFX-PheX-5_at |
1.1 |
A |
0.986189 |
| AFFX-PheX-M_at |
0.5 |
A |
0.9273 |
| AFFX-PheX-3_at |
5.4 |
A |
0.382599 |
| AFFX-ThrX-5_at |
1.3 |
A |
0.932322 |
| AFFX-ThrX-M_at |
0.8 |
A |
0.860518 |
Total number of rows: 45101
Table truncated, full table size 1198 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM142372.CEL.gz |
3.6 Mb |
(ftp)(http) |
CEL |
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