NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1429840 Query DataSets for GSM1429840
Status Public on Aug 20, 2014
Title Media 6h_1
Sample type RNA
 
Source name Media 6h
Organism Homo sapiens
Characteristics cell type: peripheral blood monuclear cells
donor id: Healthy donor 1
Treatment protocol Adherent peripheral blood monuclear cells from four healthy donors were stimulated with IL-10, IL-15 (R&D Systems), or IL-4 in RPMI 1640 supplemented with 10% fetal-calf serum. Cells were harvested at 6 h or 24 h after stimulation and monocytes purified by CD14 microbeads (Miltenyi Biotec).
Extracted molecule total RNA
Extraction protocol Trizol protocol for RNA isolation followed by purification of RNA by Qiagen Rneasy kit
Label biotin
Label protocol Performed by UCLA Clinical Microarray Core using Ambion Labeling kit
 
Hybridization protocol Performed by UCLA Clinical Microarray Core on GPL570
Scan protocol Performed by UCLA Clinical Microarray Core
Description A2
Data processing Dchip analysis and RMA normalization using DNA-Chip Analyzer (Build date: Feb 21 2010, www.dchip.org)
 
Submission date Jul 08, 2014
Last update date Aug 20, 2014
Contact name Dennis Jay Montoya
E-mail(s) [email protected]
Organization name UC Davis School of Medicine
Department Biochemistry and Molecular Medicine
Street address 2700 Stockton Blvd #2354
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
 
Platform ID GPL570
Series (1)
GSE59184 Microarray analysis adherent peripheral blood mononuclear cells stimulated with IL-10, IL-15, and IL-4

Data table header descriptions
ID_REF
VALUE Normalized signal
ABS_CALL
A2 Standard Error

Data table
ID_REF VALUE ABS_CALL A2 Standard Error
AFFX-BioB-5_at 444.08 P 13.2
AFFX-BioB-M_at 579.27 P 11.43
AFFX-BioB-3_at 445.91 P 11.45
AFFX-BioC-5_at 902.23 P 24.44
AFFX-BioC-3_at 1114.31 P 25
AFFX-BioDn-5_at 1904.11 P 33.2
AFFX-BioDn-3_at 3466.69 P 45.73
AFFX-CreX-5_at 11207.75 P 129.29
AFFX-CreX-3_at 10371.52 P 117.16
AFFX-DapX-5_at 39.98 M 2.1
AFFX-DapX-M_at 271.69 P 7.47
AFFX-DapX-3_at 389.6 P 10.96
AFFX-LysX-5_at 37.11 P 2.42
AFFX-LysX-M_at 29.74 P 2.68
AFFX-LysX-3_at 134.62 P 3.96
AFFX-PheX-5_at 13.76 A 1.64
AFFX-PheX-M_at 32.13 A 3.46
AFFX-PheX-3_at 68.05 A 3.89
AFFX-ThrX-5_at 11.56 P 1.87
AFFX-ThrX-M_at 31.59 A 2.64

Total number of rows: 54675

Table truncated, full table size 1280 Kbytes.




Supplementary file Size Download File type/resource
GSM1429840_A2.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap