|
| Status |
Public on Dec 28, 2006 |
| Title |
CMA-01 |
| Sample type |
RNA |
| |
|
| Source name |
Human multiple myeloma cell line (HMCL) CMA-01
|
| Organism |
Homo sapiens |
| Characteristics |
HMCL derived from multiple myeloma primary tumor. CMA-01 shows t(11;14) translocation
|
| Growth protocol |
Iscove's modified Dulbecco’s medium supplemented with 10% FCS and 20 U/mL recombinant human IL-6 (R&D System, Minneapolis, MN, USA)
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions (Gibco BRL). RNA was purified using the Rneasy Mini Kit according to the manufacturer's instruction (Qiagen).
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 micrograms of total RNA (Expression Analysis Technical Manual, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 15 micrograms of cRNA were hybridized for 16 hr and 30 minutes at 45°C on GeneChip HG-U133A Arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
| Scan protocol |
HG-U133A arrays were scanned using the Agilent GeneArray Scanner G2500A (Affymetrix).
|
| Description |
Gene expression profiling data from human myeloma cell line CMA-01
|
| Data processing |
The probe-level signals were converted to expression values using the Bioconductor function for Robust Multi-array Analysis (RMA), in which perfect match intensities are background adjusted, normalized by means of quantile-quantile normalization, and log2 transformed..
|
| |
|
| Submission date |
Nov 01, 2006 |
| Last update date |
Apr 24, 2013 |
| Contact name |
Luca Agnelli |
| E-mail(s) |
[email protected], [email protected]
|
| Phone |
+390223903581
|
| Organization name |
IRCCS Istituto Nazionale dei Tumori
|
| Department |
Department of Advanced Diagnostics
|
| Street address |
Venezian 1
|
| City |
MILAN |
| ZIP/Postal code |
20133 |
| Country |
Italy |
| |
|
| Platform ID |
GPL96 |
| Series (1) |
| GSE6205 |
Human myeloma cell lines gene expression profiling |
|
