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Sample GSM146217 Query DataSets for GSM146217
Status Public on Jan 01, 2007
Title Amersham-MRP2-1
Sample type RNA
 
Source name Adult mouse retina pool 2
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from pool 2 of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ºC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Extraction protocol Retinas were dissected, collected and stored in Trizol (one pair of retinas per eppendorf tube) at -80°C prior to pooling.
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP2 technical replicate 1
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date Nov 18, 2006
Last update date Dec 27, 2006
Contact name Winston Patrick Kuo
E-mail(s) [email protected]
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (1)
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 122.4930233 0.240225033 GOOD
2 22625.4246 44.37145249 GOOD
3 872.1666667 1.710434279 GOOD
4 2741.957346 5.377341298 GOOD
5 31.01036269 0.060815426 EMPTY
6 3153.206731 6.183855778 GOOD
7 3229.187817 6.332864746 GOOD
8 34.625 0.067904208 EMPTY
9 6426.709677 12.60362836 GOOD
10 418.1979167 0.82014147 GOOD
11 12156.04762 23.83961843 GOOD
12 120.984456 0.237266532 GOOD
13 9370 18.37581027 GOOD
14 4798.14486 9.409797183 GOOD
15 544.6486486 1.068128093 GOOD
16 2304.548387 4.519524432 GOOD
17 853.5671642 1.673958193 GOOD
18 4983.444444 9.773194196 GOOD
19 25.85492228 0.050704925 EMPTY
20 35.31606218 0.069259473 EMPTY

Total number of rows: 10500

Table truncated, full table size 346 Kbytes.




Supplementary file Size Download File type/resource
GSM146217.tif.gz 14.9 Mb (ftp)(http) TIFF

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