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Sample GSM146218 Query DataSets for GSM146218
Status Public on Jan 01, 2007
Title Amersham-MRP2-2
Sample type RNA
 
Source name Adult mouse retina pool 2
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from pool 2 of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ºC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Extraction protocol Retinas were dissected, collected and stored in Trizol (one pair of retinas per eppendorf tube) at -80°C prior to pooling.
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP2 technical replicate 2
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date Nov 18, 2006
Last update date Dec 27, 2006
Contact name Winston Patrick Kuo
E-mail(s) [email protected]
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (1)
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 98.94300518 0.291664934 EMPTY
2 17656.87455 52.04906741 GOOD
3 1078.340796 3.178741097 GOOD
4 1597.903061 4.710310645 GOOD
5 30.81865285 0.090847456 EMPTY
6 2361.989796 6.96269126 GOOD
7 2374.091398 6.998364453 GOOD
8 26.47409326 0.078040531 EMPTY
9 4181.492754 12.32623574 GOOD
10 227.3157895 0.670083191 GOOD
11 7625.040541 22.47715177 GOOD
12 71.70466321 0.211371545 EMPTY
13 6476.622066 19.09183517 GOOD
14 3779.530806 11.14132929 GOOD
15 140 0.412693051 GOOD
16 1589.589109 4.685802714 GOOD
17 603.0277778 1.777609812 GOOD
18 1277.327586 3.765315852 GOOD
19 40.61458333 0.119723974 EMPTY
20 16.06885246 0.047367884 EMPTY

Total number of rows: 10500

Table truncated, full table size 346 Kbytes.




Supplementary file Size Download File type/resource
GSM146218.tif.gz 14.8 Mb (ftp)(http) TIFF

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