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Sample GSM146219 Query DataSets for GSM146219
Status Public on Jan 01, 2007
Title Amersham-MRP2-3
Sample type RNA
 
Source name Adult mouse retina pool 2
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from pool 2 of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ºC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Extraction protocol Retinas were dissected, collected and stored in Trizol (one pair of retinas per eppendorf tube) at -80°C prior to pooling.
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP2 technical replicate 3
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date Nov 18, 2006
Last update date Dec 27, 2006
Contact name Winston Patrick Kuo
E-mail(s) [email protected]
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (1)
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 108.634715 0.222208772 EMPTY
2 17420.86869 35.63381966 GOOD
3 952.7401961 1.948799049 GOOD
4 2751.633663 5.628377063 GOOD
5 7.62037037 0.015587219 EMPTY
6 2925.691489 5.984406679 GOOD
7 3091.263158 6.323078136 GOOD
8 34.50362319 0.070576038 EMPTY
9 6712.71028 13.73063031 GOOD
10 343.8956044 0.703427261 GOOD
11 11787.9065 24.11177893 GOOD
12 142.6217617 0.29172817 GOOD
13 9038.656388 18.48827734 GOOD
14 5554.069444 11.3606682 GOOD
15 505.2555556 1.033483787 GOOD
16 2186.926829 4.473287621 GOOD
17 792.6825397 1.621406325 GOOD
18 3855.192488 7.885670707 GOOD
19 30.8557377 0.063114407 EMPTY
20 33.67868852 0.068888661 EMPTY

Total number of rows: 10500

Table truncated, full table size 346 Kbytes.




Supplementary file Size Download File type/resource
GSM146219.tif.gz 14.9 Mb (ftp)(http) TIFF

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