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Sample GSM146220 Query DataSets for GSM146220
Status Public on Jan 01, 2007
Title Amersham-MRP2-4
Sample type RNA
 
Source name Adult mouse retina pool 2
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from pool 2 of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ºC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Extraction protocol Retinas were dissected, collected and stored in Trizol (one pair of retinas per eppendorf tube) at -80°C prior to pooling.
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP2 technical replicate 4
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date Nov 18, 2006
Last update date Dec 27, 2006
Contact name Winston Patrick Kuo
E-mail(s) [email protected]
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (1)
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 150.7409326 0.279849767 GOOD
2 21640.28102 40.17507051 GOOD
3 981.7932692 1.822694159 GOOD
4 MSR
5 19.71296296 0.036597014 EMPTY
6 3157.306931 5.861524092 GOOD
7 3185.178378 5.913267291 GOOD
8 14.85233161 0.027573277 EMPTY
9 4456.990244 8.274379484 GOOD
10 545.2316384 1.012219735 GOOD
11 12225.37751 22.69635052 GOOD
12 203.4378109 0.377681251 GOOD
13 9254.823256 17.18153182 GOOD
14 4850.263889 9.004489985 GOOD
15 553.0232558 1.026684833 GOOD
16 2271.078049 4.216244727 GOOD
17 909.772973 1.688988849 GOOD
18 5529.199115 10.26492974 GOOD
19 15.22279793 0.028261046 EMPTY
20 12.11627907 0.02249381 EMPTY

Total number of rows: 10500

Table truncated, full table size 346 Kbytes.




Supplementary file Size Download File type/resource
GSM146220.tif.gz 14.9 Mb (ftp)(http) TIFF

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