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Sample GSM146221 Query DataSets for GSM146221
Status Public on Jan 01, 2007
Title Amersham-MRP2-5
Sample type RNA
 
Source name Adult mouse retina pool 2
Organism Mus musculus
Characteristics The adult mouse retina samples were obtained from pool 2 of C57/B6 mice (n = 350), which were purchased from Charles River Laboratories (Charles River Laboratories, Inc., Willmington, MA). All samples were placed in TRIzol reagent (Invitrogen, Carlsbad, CA) and stored at -80ºC before RNA extraction. Total RNA was extracted with TRIzol reagent according to the manufacturer's instructions. For a quality control measure of the samples, total RNA was ran through a 1% agarose gel and using the 2100 Agilent BioAnalyzer System (Agilent Technologies, Palo Alto, CA) to check for possible contamination and degradation.
Extracted molecule total RNA
Extraction protocol Retinas were dissected, collected and stored in Trizol (one pair of retinas per eppendorf tube) at -80°C prior to pooling.
Label Biotin
Label protocol CodeLink Expression Assay protocol
 
Hybridization protocol CodeLink Expression Assay protocol
Scan protocol CodeLink Expression Assay protocol
Description MRP2 technical replicate 5
Data processing Signal intensities across microarrays were normalized using the quantile normalization (www.bioconductor.org).
 
Submission date Nov 18, 2006
Last update date Dec 27, 2006
Contact name Winston Patrick Kuo
E-mail(s) [email protected]
Organization name Harvard Medical School
Department Genetics
Lab Cepko
Street address 188 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL3760
Series (1)
GSE6313 Comparison of Hybridization-based and Sequencing-based Gene Expression Technologies on Biological Replicates

Data table header descriptions
ID_REF
RAW_INTENSITY Raw signal intensities corrected for background
VALUE Intensity normalized by median of spot-based raw intensity
FLAG Binary flag (good or poor)

Data table
ID_REF RAW_INTENSITY VALUE FLAG
1 153.4145078 0.322198358 EMPTY
2 16830.78125 35.34770058 GOOD
3 938.2871287 1.970573557 GOOD
4 2003.588517 4.207900151 GOOD
5 48.31606218 0.101472515 EMPTY
6 2474.728643 5.197380073 GOOD
7 2524.370787 5.301637599 GOOD
8 15.89051095 0.033372962 EMPTY
9 6927.237864 14.54845893 GOOD
10 351.372093 0.737945277 GOOD
11 11186.79747 23.49430852 GOOD
12 117.4870466 0.246744158 EMPTY
13 7207.497653 15.13705544 GOOD
14 4466.743119 9.380972635 GOOD
15 353.0853659 0.741543462 GOOD
16 1966.755319 4.13054374 GOOD
17 724.8121547 1.522237301 GOOD
18 2115.431373 4.442790482 GOOD
19 33.98148148 0.071367289 EMPTY
20 40.765625 0.085615224 EMPTY

Total number of rows: 10500

Table truncated, full table size 347 Kbytes.




Supplementary file Size Download File type/resource
GSM146221.tif.gz 14.9 Mb (ftp)(http) TIFF

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