|
| Status |
Public on Aug 08, 2014 |
| Title |
transcriptome_0 |
| Sample type |
SRA |
| |
|
| Source name |
Hyphal cells and spores
|
| Organism |
Pestalotiopsis fici W106-1 |
| Characteristics |
strain: W106-1/CGMCC3.15140
|
| Extracted molecule |
total RNA |
| Extraction protocol |
sample were collected after 20 days,the total RNA was extracted with TriZol®.
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Illumina Casava software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to Pestalotiopsi ficiW106-1 whole genome using tophat
Fragments Per Kilobase of exon per Million mapped reads (FPKM) were calculated using cufflink
Genome_build: PFICI
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample
|
| |
|
| Submission date |
Aug 04, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
wang xiu na |
| E-mail(s) |
[email protected]
|
| Organization name |
Institute of Microbiology, Chinese Academy of Sciences
|
| Street address |
NO.1 Beichen West Road, Chaoyang District, Beijing
|
| City |
Beijing |
| ZIP/Postal code |
100101 |
| Country |
China |
| |
|
| Platform ID |
GPL19035 |
| Series (1) |
| GSE60046 |
Gene expression study of Pestalotiopsis fici on rice medium |
|
| Relations |
| BioSample |
SAMN02951130 |
| SRA |
SRX668828 |
