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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 29, 2006 |
| Title |
1412082023C_Parent2 |
| Sample type |
RNA |
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| Source name |
EBV-transformed cell line of lymphoblasts extrated from peripheral blood
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| Organism |
Homo sapiens |
| Characteristics |
Immortalized lymphoblastoid cell line
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| Treatment protocol |
No treatment
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| Growth protocol |
RPMI-1640 medium (Invitrogen, Inc., Carlsbad, CA), containing 2 mmol/L L-glutamine, 100 ug/ml streptomycin, and 10% fetal calf serum
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| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol reagent (Invitrogen, Inc.)
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| Label |
Biotin-Labeled cRNA
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| Label protocol |
Illlumina® TotalPrep RNA amplification kit, manufactured by Ambion, Inc (Austin, TX) according to the manufacturer’s protocol
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| Hybridization protocol |
Refer to the Illumina Gene Expression System Manual
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| Scan protocol |
Refer to the Illumina Gene Expression System Manual
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| Description |
Comparison of genome-wide expression in EBV-transformed lymphoblastoid cell lines of patients and controls
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| Data processing |
Raw data for each sample was output using the Illumina BeadStudio
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| Submission date |
Nov 27, 2006 |
| Last update date |
Nov 28, 2006 |
| Contact name |
Yelena Bykhovskaya |
| Organization name |
Cedars-Sinai Medical Center
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| Street address |
8700 Beverly Blvd
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| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90048 |
| Country |
USA |
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| Platform ID |
GPL2507 |
| Series (1) |
| GSE6374 |
Lymphoblastoid cell lines of families with Mitochondrial Myopathy and Sideroblastic Anemia |
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| Data table header descriptions |
| ID_REF |
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| VALUE |
Average Signal output by Illumina Inc. BeadStudio version 1.5.0.34, Normalization = Background, Error model = none |
| Data table |
| ID_REF |
VALUE |
| GI_10047089-S |
-9.3 |
| GI_10047091-S |
18.9 |
| GI_10047093-S |
356.8 |
| GI_10047099-S |
125.7 |
| GI_10047103-S |
2033.7 |
| GI_10047105-S |
4.4 |
| GI_10047121-S |
-3.6 |
| GI_10047123-S |
332 |
| GI_10047133-A |
-8 |
| GI_10047133-I |
5.4 |
| GI_10092578-S |
-7 |
| GI_10092585-S |
54.3 |
| GI_10092596-S |
63.9 |
| GI_10092600-S |
447 |
| GI_10092602-S |
1.1 |
| GI_10092603-S |
4.7 |
| GI_10092611-A |
156.2 |
| GI_10092616-S |
1.6 |
| GI_10092618-S |
3890.5 |
| GI_10092638-S |
17.7 |
Total number of rows: 47293
Table truncated, full table size 810 Kbytes.
| Supplementary data files not provided |
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