|
| Status |
Public on Feb 20, 2015 |
| Title |
PB-Cre Ptenlox/lox p53lox/lox 6mo_PTENp53538357 |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
PB-Cre Ptenlox/lox p53lox/lox (129/Bl6)
|
| Organism |
Mus musculus |
| Characteristics |
strain: 129/Bl6
tissue: prostate cancer
gender: male
gem model of prostate cancer: Pten-/- p53-/-
|
| Treatment protocol |
no treatment
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was prepared using the Qiagen DNA easy kit
|
| Label |
Cy5
|
| Label protocol |
starting 3ug DNA and following Agilent standard cy5/cy3 labeling protocols.
|
| |
|
| Channel 2 |
| Source name |
control (wild-type littermate)
|
| Organism |
Mus musculus |
| Characteristics |
strain: 129/Bl6
genotype/variation: wild-type
|
| Treatment protocol |
no treatment
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was prepared using the Qiagen DNA easy kit
|
| Label |
Cy3
|
| Label protocol |
starting 3ug DNA and following Agilent standard cy5/cy3 labeling protocols.
|
| |
|
| |
| Hybridization protocol |
hybridize the arrays at 20rpm of 65C for 40 hours following Agilent instruction.
|
| Scan protocol |
Slides were scanned using the Agilent Scanner with the standard protocols.
|
| Description |
PTENp53538357
CGH data
|
| Data processing |
The raw data were extracted with Feature Extraction using Agilent default analysis settings.
|
| |
|
| Submission date |
Sep 12, 2014 |
| Last update date |
Feb 20, 2015 |
| Contact name |
Jeffrey Zhao |
| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
Genomics Core
|
| Street address |
1275 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL15076 |
| Series (2) |
| GSE61382 |
Identifying actionable targets through integrative analyses of GEM model and human prostate cancer profiling [Agilent] |
| GSE61383 |
Identifying actionable targets through integrative analyses of GEM model and human prostate cancer profiling |
|
