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Sample GSM15080 Query DataSets for GSM15080
Status Public on Jan 15, 2004
Title Day 7 Mouse #52 - 1st replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 7 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE956 Day 7 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 159616 65516.9 65517 0.716399 1041.88 1037 34.2919 89143.4 45196.7 44361 7501.6 643.511 639 31.5685 -0.252986 0
2 59.6026 1025.24 1032 24.3161 1030.43 1028.5 24.3088 64.7336 628.28 617 25.2001 629.833 628.5 32.0782 0 0
3 55.9562 984.136 978 20.4713 1022.62 1024 19.8474 44.3487 618.227 620.5 15.1498 628.243 627 25.2699 0 0
4 71.5484 1038.77 1039.5 20.4426 1032.57 1032 25.362 129.369 662.909 656.5 21.887 632.437 633 24.6272 0.257231 0
5 63.6472 1000.41 996 33.3389 1028.64 1030 22.5754 48.9857 628 627 29.2496 632.271 628 26.642 0 0
6 147.054 1059.48 1065 25.572 1020.69 1020.5 23.1822 152.578 665.76 665 28.7841 625.318 624 23.6452 0.0160144 0
7 72.1913 994.241 995 20.1471 1023.1 1021 25.6059 48.8425 616.172 613 27.5669 620.525 620 25.8972 0 0
8 38674.9 16672.2 16654 1546.82 1031.88 1029 28.5795 81730.6 41391.2 41192 4269.29 639.424 640 35.0884 0.324956 1.079480466
9 469.657 1203.31 1208 30.3088 1031.54 1030 33.0218 437.815 820.423 824 33.6621 639.95 642 34.3533 -0.03049 -0.101285588
10 636.857 1277.92 1271.5 37.2756 1039.33 1040 32.6503 618.912 916.958 907 54.3567 645.372 643.5 32.3555 -0.0124129 -0.041234761
11 135.312 1080.22 1074 28.8182 1046.44 1047 27.6669 163.141 686.963 681 27.3601 641.471 641 31.3993 0.081226 0
12 130791 53850 51888 6630.97 1032.03 1033 31.2387 121119 61189.1 61494 4223.79 632.02 629 38.158 -0.0333653 -0.110837127
13 377.295 1157.46 1157.5 32.5523 1021.75 1020 26.1218 295.467 726.125 725 24.0783 616.935 614 29.1023 -0.106172 -0.35269575
14 394.658 1145.63 1141 34.8111 1004.01 1003 24.3807 395.621 774.542 773.5 33.6981 615.786 616 25.738 0.00105882 0.003517324
15 15892 7406.2 7484 1113.47 988.377 987 23.1277 90943.2 45925.9 44905 7207.19 611.762 612 30.8337 0.757591 2.516662827
16 1005.09 1381.17 1344 87.6702 993.583 993 22.9699 971.31 1052.71 1028 115.626 605.104 606 28.4122 -0.014847 -0.049320666
17 2363.05 1927.19 1901 76.801 1000.27 999 24.7944 1805.22 1483.33 1484 93.0839 608.541 607 26.8274 -0.116943 -0.388476237
18 277.121 1091.92 1090.5 29.8341 997.834 996 23.5481 307.719 716.923 711 29.9999 602.731 604 22.4404 0.0454841 0.15109491
19 156.367 1036.6 1031 27.1385 993.669 993 23.4386 171.864 656.08 653 26.8777 606.694 606 27.0606 0.0410388 0.136327943
20 615.622 1214.42 1214.5 35.3974 984.825 983 23.1464 707.555 915.308 906 48.545 599.875 598 26.7732 0.0604463 0.200798262

Total number of rows: 16281

Table truncated, full table size 1968 Kbytes.




Supplementary data files not provided
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