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Sample GSM15083 Query DataSets for GSM15083
Status Public on Jan 15, 2004
Title Day 1 Mouse #12 - 2nd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 1 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE954 Day 1 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 28501.6 16870.4 16433 1342.4 964.322 962 24.2672 6820.84 5436.67 5352.5 453.21 644.836 640 32.3623 -0.621031 0
2 44.983 930.48 924 16.6986 956.045 956 25.5978 42.6725 631.16 634 32.0698 624.558 623.5 29.6052 0 0
3 35.4399 910.261 904 31.0428 953.442 954 22.7121 47.7311 595.174 593 28.7792 628.476 625 29.4044 0 0
4 74.6769 967.115 965.5 23.7425 960.3 961 27.7103 40.8522 637.5 639 30.8457 632.927 633 29.0471 -0.261971 0
5 195.157 1018.19 990 63.0803 946.941 950 32.4847 83.5006 661.808 659 44.8723 623.98 622 32.698 -0.368695 0
6 98 985.72 984 18.2791 966.515 968 24.9605 57.4304 655.76 652 32.0615 637.423 636.5 29.8305 -0.232084 0
7 31.3424 960.346 943 53.6693 972.148 972 20.0861 55.724 616.385 615 37.7519 641.389 640 34.3284 0 0
8 10473.5 6810.7 6765 324.222 972.102 972 22.8061 11399.5 8647 8554 475.778 644.376 645 27.677 0.0367956 0.122232337
9 292.782 1092.73 1094.5 21.6931 969.662 970 23.3991 240.379 796.955 791.5 37.8839 643.702 644 28.7638 -0.0856493 -0.284520816
10 186.374 1042.04 1046 24.1369 975.813 974.5 21.5664 155.071 738.304 736 23.997 648.12 646 32.041 -0.0798542 -0.26526991
11 101.274 1002.58 1006 18.396 981.83 980 22.9409 78.0001 690.885 687 34.9563 657.51 656 30.5451 -0.113403 0
12 39552.8 22633.9 21304.5 4809.81 990.679 989.5 22.8844 37133.4 27385.9 25353.5 7261.44 660.179 658 29.2043 -0.0274125 -0.091062354
13 195.555 1066.84 1068 28.3324 995.642 995 23.6379 148.445 752.56 754 31.0981 667.208 667 26.1038 -0.119703 -0.397644759
14 130.975 1033.63 1037 24.8645 997.224 998 23.5048 129.542 743 736 30.2426 671.652 672 29.5134 -0.00477769 -0.015871143
15 5109.54 3832.26 3803 290.446 1000.4 1001 18.3736 20480.9 15067.5 14937 1575 677.464 678 31.003 0.602967 2.003013018
16 289.339 1125.45 1122 31.6776 1004.09 1004 20.2048 209.167 807.897 793 46.4307 677.667 676 31.0375 -0.140914 -0.468106176
17 1348.7 1718 1721 54.6149 1010.1 1009.5 21.2565 1081.29 1435.88 1429 94.1037 683.435 684.5 33.1256 -0.0959727 -0.318814408
18 121.869 1059.52 1068 25.7493 1027.84 1027 26.664 94.1765 744.741 742 39.4204 699.348 699.5 39.1595 -0.111951 0
19 92.8853 1037.7 1036 21.2038 1021.61 1020.5 22.7059 92.2588 731 722 38.3636 687.253 686 25.7419 -0.00293934 0
20 221.21 1101.72 1099 20.6368 1016.79 1017 23.3956 183.752 800.8 806 30.9745 689.523 689 32.7963 -0.0805729 -0.26765738

Total number of rows: 16281

Table truncated, full table size 1933 Kbytes.




Supplementary data files not provided
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