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Sample GSM15084 Query DataSets for GSM15084
Status Public on Jan 15, 2004
Title Day 3 Mouse #32 - 2nd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 3 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE955 Day 3 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 114679 65516.7 65517 0.617688 924.387 922 26.6479 46802.1 46911.9 47466 4611.27 675.148 677.5 30.1323 -0.389221 0
2 44.2453 919.667 916.5 23.8595 921.569 922.5 23.1062 33.4923 672.208 679 33.7136 668.75 666.5 26.4283 -0.120922 0
3 27.5978 909.083 911 20.1988 929.457 930 19.849 40.4695 639.458 640.5 19.294 668.702 669 31.3426 0 0
4 39.2247 916.043 919 23.9971 921.096 922.5 22.8664 43.3047 683.913 682 31.1957 670.979 670 33.1832 0.0429753 0
5 31.7847 890 890 20.441 917.647 920 22.1061 39.3634 651.24 651 20.1748 666.237 664 31.5259 0 0
6 36.8906 907.833 906 21.3148 918.235 919 21.4276 65.8357 700.208 699.5 28.5779 665.517 660 31.2945 0.251546 0
7 31.1205 885.964 882 25.5843 917.031 919 22.3826 35.9872 638.143 634 32.1429 669.629 671 27.8712 0 0
8 22235.9 13399.8 13297.5 762.761 909.529 911 22.1193 39704.3 39919.7 39672.5 2726.94 663.229 668 31.385 0.251782 0.8364017
9 226.884 1011.04 1008 29.2188 911.558 911 24.7162 217.758 849.964 857.5 38.8344 662.147 661 29.7805 -0.0178288 -0.059225992
10 360.865 1090.32 1089 28.2853 917.358 915 20.9533 402.478 1038.12 1029 61.0678 663.543 660 33.3752 0.0473973 0.157450422
11 42.4764 907.889 909 16.8051 924.56 925.5 25.0632 54.5918 692.556 691 24.9019 669.464 666.5 33.6401 0.10898 0
12 75253.4 43302.7 42808 8673.84 929.092 929 21.3549 65604.6 65508 65517 21.9031 680.27 680.5 33.1071 -0.0595917 0
13 129.964 980.308 980.5 16.0444 934.904 935 21.5415 101.713 752.423 754.5 35.9368 680.248 680 34.534 -0.106444 -0.353599314
14 133.894 988.536 994 26.7159 940.94 943 24.1854 131.964 791.571 793.5 36.4371 689.436 689 33.9806 -0.00630749 -0.020953028
15 8857.85 5901.67 5777.5 506.623 942.165 944 23.3721 34220.2 34523.4 34213.5 2644.88 697.19 692.5 35.5934 0.586954 1.949818983
16 406.932 1141.83 1123 68.2863 943.255 941 19.0842 360.46 1018 1017 81.1038 685.483 685 33.0009 -0.052665 -0.174949343
17 922.08 1433.48 1435 42.7059 949 952 22.0785 518.283 1176.07 1172 64.5183 684.86 686 33.6902 -0.250202 -0.831153053
18 141.844 1009.46 1010.5 47.5733 957.375 956.5 28.4649 167.085 845.143 857.5 103.477 708.292 700.5 46.8786 0.071126 0.236275458
19 69.5043 959.538 958.5 23.8264 947.988 949 25.1299 95.7652 754.346 759.5 27.9728 688.516 685 32.0897 0.139196 0
20 303.897 1092.38 1093.5 30.8766 950.935 953 23.1089 373.168 1038.73 1026.5 62.1067 693.895 688 34.2942 0.0891773 0.296240578

Total number of rows: 16281

Table truncated, full table size 1942 Kbytes.




Supplementary data files not provided
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