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Sample GSM15088 Query DataSets for GSM15088
Status Public on Jan 15, 2004
Title Day 1 Mouse #13 - 3rd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 1 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE954 Day 1 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 46308.8 31994.5 30878.5 6066.74 1001.03 999.5 33.7437 978.844 1202.58 1185.5 136.944 561.704 556.5 44.4129 -1.67495 0
2 49.9927 981.923 978 32.9241 1002.87 1005.5 25.7075 64.4521 572.192 573 29.968 574.4 574.5 36.9544 0.110331 0
3 43.5657 955.6 958 28.1706 988.175 987 27.2278 49.4775 555.92 554 32.2502 568.131 565 36.0302 0.0552624 0
4 113.949 1007.41 1006 24.149 984.269 983 24.6349 85.0163 580.593 573 42.4538 570.124 570 29.8854 -0.127209 0
5 49.313 965.786 969 36.7629 987.049 989 25.4919 72.1098 573.964 568.5 36.7338 570.741 570 31.0963 0.165033 0
6 115.315 1025.74 1015 41.2698 1001.15 1001 24.6942 108.319 630.333 633 40.8986 603.92 603.5 37.6313 -0.0271797 0
7 43.2311 982.808 985 17.7449 1008.61 1009 27.3231 49.7274 608 599.5 33.3047 620.574 620.5 37.212 0 0
8 24265.1 17220.8 17183 1347.81 1011.84 1012 29.5749 24314.6 17740 17870 1437.58 630.462 630 33.2363 0.000884377 0.002937837
9 343.135 1197.71 1205.5 48.1767 1020.27 1020 29.7662 238.583 767.333 754 28.1744 649.013 645 47.7655 -0.157826 -0.524286624
10 389.351 1220.84 1226 42.2736 1014.17 1015 30.2256 347.6 853.88 846 53.5244 657.102 660 45.4493 -0.0492605 -0.163639839
11 129.872 1063.3 1061 41.3129 1028.16 1029.5 29.2234 156.475 749.519 733 79.0158 690.212 697.5 50.4481 0.0809285 0
12 90520.7 60344.3 62411 5391.7 1031.63 1029 32.4299 89939.9 65516.9 65517 0.653863 705.285 703 47.4491 -0.00279511 0
13 231.917 1141.89 1142 28.286 1037.61 1036 28.9034 188.839 779.464 787 56.7891 697.487 696 50.783 -0.0892401 0
14 261.344 1134.59 1134 29.056 1011.23 1009 27.8715 235.89 753.273 755.5 55.1873 637.667 633 45.7729 -0.0445039 -0.147838756
15 9743.25 7488.3 7578 603.326 982.579 984 30.1801 32345.8 23269.7 22931 2445.66 593.559 595.5 40.8458 0.521115 1.731106559
16 486.519 1256.15 1258 67.13 985.575 987.5 32.9019 471.094 877.889 888 68.409 592.606 587 48.4847 -0.0139923 -0.046481414
17 886.292 1536.46 1526 62.749 999.377 999 31.1083 646.412 1018.39 1010 82.5973 608.913 609 42.1488 -0.137067 -0.455326718
18 221.895 1121.35 1113 86.1287 1024.67 1020 46.5417 283.776 775.462 755 134.592 626.236 617 69.9007 0.106827 0.354871613
19 153.947 1035.09 1038.5 21.9326 983.601 986 24.9925 131.467 616.227 616 28.6555 574.333 573 31.4193 -0.0685558 -0.227737438
20 350.703 1144.4 1141 45.3036 963.43 963 29.8752 372.126 775.04 763 65.4901 560.962 560 33.4753 0.0257503 0.085540645

Total number of rows: 16281

Table truncated, full table size 1957 Kbytes.




Supplementary data files not provided
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