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Sample GSM15091 Query DataSets for GSM15091
Status Public on Jan 15, 2004
Title Day 11 Mouse #73 - 3rd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 11 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) [email protected]
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE957 Day 11 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 82739.9 64851.2 65514.5 1128.35 933.859 928.5 41.1128 6309.52 5252.23 5255.5 465.242 565.094 562.5 36.1176 -1.11772 0
2 74.897 886.577 889 26.5679 907.416 906 26.273 90.0839 561.5 561 51.122 558.201 560 36.9036 0.0801827 0
3 82.3434 889.333 890.5 19.9427 904.959 904 26.9487 74.0644 547.75 547 33.403 556.8 561 39.5865 -0.0460193 0
4 84.2859 885.107 897 29.6802 898.375 898 25.0856 105.953 563.786 568 33.6037 548.813 552.5 44.5061 0.0993569 0
5 87.3144 879.24 877 28.5953 890.027 891 30.5542 117.997 555.6 551 35.2527 531.534 531 44.6504 0.130786 0
6 64.5203 867.8 869 16.6183 896.647 899 28.9452 90.4406 541.4 541 27.2855 537.314 538 48.3355 0.146667 0
7 98.7411 894.958 889.5 26.4468 897.268 896 30.2075 98.8659 557.708 560.5 28.5817 548.436 545 43.1993 0.0005483 0
8 30819 24553.9 24424 1844.64 896.41 899 27.6498 41313.3 31737 31269 2288.54 536.507 538 40.6945 0.127271 0.422785111
9 300.869 1039.08 1039 27.1077 895.163 896 28.1459 320.242 720.92 717 47.0885 533.523 535 40.8718 0.0271014 0.090028902
10 492.767 1164.04 1157.5 45 880.572 881.5 24.8592 552.978 890.308 881 67.6336 516.461 512 33.0686 0.0500667 0.166317977
11 58.6266 861.68 870 25.842 895.535 893 30.1187 74.4438 536.48 536 24.5104 544.145 542 41.3474 0.103734 0
12 84790.5 65517.1 65517 0.717282 901.1 899.5 32.361 85148 65517 65517 0.80645 536.993 532 44.5428 0.00182737 0
13 186.063 966.435 978 42.9766 905.02 904.5 27.6028 245.197 652.478 647 38.5332 526.987 526.5 39.2249 0.119854 0.39814637
14 233.234 1015.81 1015 31.7137 919.979 921 27.4554 231.942 676.269 685 32.9321 560.715 559.5 38.6421 -0.00241279 -0.008015115
15 14095.7 11703.2 11723 742.754 908.199 906 29.2043 66422.6 50674.3 50539.5 4284.18 544.116 542 41.2718 0.67323 2.236421651
16 768.162 1394.3 1394 129.185 906.397 904 27.6608 859.27 1153.63 1115 147.001 539.358 539 34.077 0.0486763 0.161699169
17 783.598 1426.04 1398.5 83.9717 928.1 926 28.2439 632.416 991.346 974 87.8772 555.993 549 41.9896 -0.0930904 -0.309239615
18 503.51 1229.82 1276 238.791 937.855 938.5 30.6671 764.888 1133.14 1251.5 379.19 591.173 584.5 51.3538 0.18159 0
19 79.3838 913.231 912.5 31.5941 930.385 929 30.8581 99.4888 569.654 563.5 28.973 559.429 561 46.9589 0.098042 0
20 709.203 1375.67 1380 58.3939 930.335 931 25.0372 1147.96 1397.52 1392 94.2665 555.394 557 37.1918 0.209155 0.694797871

Total number of rows: 16281

Table truncated, full table size 1955 Kbytes.




Supplementary data files not provided
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