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Sample GSM151394 Query DataSets for GSM151394
Status Public on Dec 01, 2007
Title Sepsis Patient M9
Sample type RNA
 
Channel 1
Source name Neutrophil
Organism Homo sapiens
Characteristics Sepsis Patient
Infection type: Mixed
Biomaterial provider Nepean Hospital Intensive Care Unit
Extracted molecule total RNA
Extraction protocol RiboPure-Blood kit (AmbionTM)
Label Cy5
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
Channel 2
Source name Cell line
Organism Homo sapiens
Characteristics Universal Human Reference RNA
Biomaterial provider Stratagene
Extracted molecule total RNA
Extraction protocol not applicable
Label Cy3
Label protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
 
 
Hybridization protocol SuperScriptÖ Plus Indirect cDNA Labeling System for DNA Microarrays (Invitrogen)
Scan protocol GenePix 4000B laser scanner and GenePix software (Axon Instruments)
Description none
Data processing Background subtraction followed by Lowess print-tip group Normalization, include genes which have 1. at least 80% of expression data with 2 fold change in either direction from the gene's median value, (2) at least 50% of expression data non-missing
 
Submission date Dec 14, 2006
Last update date Oct 09, 2007
Contact name Benjamin Man Piu Tang
E-mail(s) [email protected]
Phone 61415614883
Organization name Nepean Hospital
Department Intensive Care Medicine
Street address 12/29 Cook Street
City Glebe
State/province NSW
ZIP/Postal code 2037
Country Australia
 
Platform ID GPL4274
Series (1)
GSE6535 Critically ill patients with either gram-positive sepsis or gram-negative sepsis

Data table header descriptions
ID_REF
VALUE normalized log (cy5/cy3)

Data table
ID_REF VALUE
AB000464 0.005982215
AB000509 -1.061764598
AB000520 0.249046698
AB000895 0.949206233
AB001328 -0.914104581
AB001451 -0.240675807
AB002282 -1.544657111
AB002293 0.544311225
AB002296 0.685569584
AB002297 0.939717889
AB002298
AB002299 1.138172507
AB002301 -0.309041113
AB002304 -1.128145695
AB002306 -0.067072332
AB002308 -0.781257391
AB002313 1.535722375
AB002314 0.467054725
AB002316 -0.629881978
AB002318 0.414440602

Total number of rows: 18664

Table truncated, full table size 388 Kbytes.




Supplementary file Size Download File type/resource
GSM151394.gpr.gz 2.0 Mb (ftp)(http) GPR

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