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GEO accession:
Sample GSM153891
Query DataSets for GSM153891
Status
Public on Mar 01, 2007
Title
E. histolytica strain HM1 +5AzC 7 day
Sample type
RNA
Source name
Trophozoites grown in TYI
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS
Media: TYI +5-Azacytidine
7-day treatment with 5-Azacytidine
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
Affymetrix single amplification
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites after 7-day treatment with 27 micromolar 5-Azacytidine
Data processing
GCOS scaling only- target 500
Submission date
Jan 03, 2007
Last update date
Jan 09, 2007
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (1)
GSE6635
Expression data of E. histolytica trophozoites treated with 5AzaC
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
1.m00596_at
19536
P
0.000219
1.m00597_at
2697
P
0.000219
1.m00599_at
30.6
A
0.641332
1.m00600_x_at
2.7
A
0.999041
1.m00602_at
131.2
P
0.000805
1.m00602_x_at
69.4
A
0.162935
1.m00603_at
156.8
P
0.003067
1.m00603_x_at
186.5
P
0.000468
1.m00606_s_at
818.7
P
0.000219
1.m00607_at
293.3
P
0.003067
1.m00607_x_at
268.9
P
0.000266
1.m00608_at
391.2
P
0.000468
1.m00608_x_at
387.8
P
0.001354
1.m00609_at
65.6
P
0.039365
1.m00609_x_at
66
A
0.138765
1.m00610_at
69.3
A
0.138725
1.m00611_at
154.3
P
0.001602
1.m00611_x_at
66.5
A
0.060419
1.m00613_at
2999.7
P
0.000218
1.m00613_x_at
2374.1
P
0.000219
Total number of rows:
11397
Table truncated, full table size
345 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM153891.cel.gz
1.6 Mb
(ftp)
(http)
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