|
| Status |
Public on Jun 22, 2015 |
| Title |
TG N6D1C |
| Sample type |
SRA |
| |
|
| Source name |
Tergites 7-8
|
| Organism |
Blattella germanica |
| Characteristics |
treatment: None
Stage: Nymph 6 day 1
|
| Growth protocol |
Blattella germanica specimens used for the whole transcriptome analysis were obtained from a population reared at the Institut de Biologia Evolutiva (CSIC-UPF). Conditions were 70% humidity at 30 ºC and a commercial dog food diet.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted with GenElute Mammalian Total RNA kit (Sigma, Madrid, Spain).
Total RNA was send to Genomica service (Universitat Pompeu Fabra) at the PRBB (Barcelona, SPAIN) for the library construction and Sequencing. The technology used was 454,GS Junior system.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
454 GS Junior |
| |
|
| Data processing |
Adapters trimming and quality control of reads with “clean_reads v0.2.3”
Reads mapping to the following genomes were removed since might be contaminations: NC 013454; NC 017924.1; NC 016621.1; NC 013418.2; NC 016146.1, NC 005041.2, NC 012901.1, GCA 000002985.1, AE014075.1
The PamScan was used in order to search for TF domains.
Supplementary_files_format_and_content: Processed data file contains a qualitative analysis of Tfs.
|
| |
|
| Submission date |
Dec 09, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Guillem Ylla |
| E-mail(s) |
[email protected]
|
| Organization name |
Institute of Evolutionary Biology
|
| Lab |
Belles & Piulachs Labs
|
| Street address |
Passeig Marítim de la Barceloneta, 37
|
| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08003 |
| Country |
Spain |
| |
|
| Platform ID |
GPL19525 |
| Series (1) |
| GSE63993 |
Towards understanding the molecular basis of cockroach tergal gland morphogenesis. A transcriptomic approach |
|
| Relations |
| BioSample |
SAMN03256357 |
| SRA |
SRX801772 |
