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Sample GSM16260 Query DataSets for GSM16260
Status Public on May 10, 2004
Title GC2_SARB34_LT2_2D632_1
Sample type genomic
 
Channel 1
Source name SARB34 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB34/LT2
User - PCheng
Date_of_Scan = Thu Feb 13 17:43:13 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2710 3620 4808.576172 75.279411 3668.227051 160.989182 181.42009 15800 32.782928 0.942464 0.903656 0.995491 29.86894 0.851963 2362.094482 25.029411 1714.57605 90.135048 166.029037 14800 32.782928 0.924969 0.954201 0.99649 26.206171 0.879947 1 1 1 1 1 1 1 1 1 1 1 1 1 4733.296761 2337.065071 61.01964327 37.3398586 1.634169104 0.213296995
2 2960 3620 1144.50647 71.632355 1128.420776 165.147141 179.124664 15400 32.782928 0.945212 0.971214 0.994835 6.930223 0.856137 931.491943 18.235294 785.307373 66.722443 171.313095 12400 32.782928 0.909483 0.980431 0.997833 13.960699 0.87034 1 1 1 1 1 1 1 1 1 1 1 1 1 1072.874115 913.256649 13.83103555 14.59132421 0.947894472 -0.02324001
3 3210 3620 5166.42041 32.308823 4627.691895 79.289429 186.609512 18800 32.782928 0.959679 0.890068 0.997757 65.159007 0.842528 4062.637939 42.89706 3102.410889 116.258224 175.534622 16300 32.782928 0.946942 0.927917 0.996468 34.944951 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 5134.111587 4019.740879 66.18677707 64.22438036 1.030555323 0.013071311
4 3460 3630 2219.970703 56.985294 1925.317749 115.060593 182.64415 17000 28.120638 0.948752 0.952904 0.99649 19.293927 0.849738 1870.265747 14.867647 1276.579468 53.995274 176.077789 14300 28.120638 0.921161 0.967369 0.99781 34.637583 0.861677 1 1 1 1 1 1 1 1 1 1 1 1 1 2162.985409 1855.3981 27.88428546 29.64414794 0.94063373 -0.026579452
5 3710 3630 4277.932617 51.25 3778.5354 128.099121 180.54068 17800 28.120638 0.954275 0.914482 0.996056 33.395488 0.853562 2883.184814 30.735294 2271.125244 84.49015 168.124725 15700 28.120638 0.940727 0.946495 0.997246 34.124508 0.876137 1 1 1 1 1 1 1 1 1 1 1 1 1 4226.682617 2852.44952 54.48858978 45.57428164 1.195599532 0.077585736
6 3960 3630 3337.409912 62.073528 2925.937256 179.047668 180.89296 16100 28.120638 0.952551 0.932457 0.995583 18.639784 0.852922 2656.883545 51.264706 2161.067139 252.288193 175.896927 14600 28.120638 0.935808 0.949516 0.993843 10.531145 0.862006 1 1 1 1 1 1 1 1 1 1 1 1 1 3275.336384 2605.618839 42.22423985 41.63060765 1.014259513 0.00614909
7 4210 3640 4008.155762 50.514706 3316.091797 162.927917 179.124664 16700 26.586088 0.955157 0.924767 0.996132 24.600792 0.856137 3030.90332 24.07353 2238.776367 82.0681 177.33873 15500 26.586088 0.916909 0.946571 0.997215 36.931564 0.859384 1 1 1 1 1 1 1 1 1 1 1 1 1 3957.641056 3006.82979 51.02022071 48.04085286 1.06201738 0.026131624
8 4460 3640 3500.485596 33.294117 3186.015137 122.204872 180.187729 17300 26.586088 0.921571 0.924789 0.997086 28.644403 0.854204 2316.2229 18.088236 1766.004272 57.348824 177.876389 15700 26.586088 0.922877 0.957413 0.998116 40.388325 0.858407 1 1 1 1 1 1 1 1 1 1 1 1 1 3467.191479 2298.134664 44.69755392 36.717858 1.217324658 0.085406419
9 4710 3640 3175.305176 65.470589 2774.518555 193.536804 187.630173 17700 26.586088 0.95422 0.938156 0.996002 16.406725 0.840672 1982.283813 25.191177 1473.420044 80.316025 176.97937 15500 26.586088 0.935282 0.961388 0.998573 24.68105 0.860038 1 1 1 1 1 1 1 1 1 1 1 1 1 3109.834587 1957.092636 40.09066127 31.26894634 1.282123831 0.107929972
10 4960 3640 2937.505859 62.882355 2563.103516 132.881668 176.077789 16800 26.586088 0.928594 0.938232 0.997124 22.106178 0.861677 2420.050293 17.808823 2064.745117 58.638599 166.412033 15900 26.586088 0.945675 0.946983 0.99807 41.270602 0.879251 1 1 1 1 1 1 1 1 1 1 1 1 1 2874.623504 2402.24147 37.05842029 38.38119782 0.965535793 -0.015231622
11 5210 3650 3015.265625 44.485294 2767.030273 108.645462 180.89296 17700 28.685709 0.946437 0.931885 0.996391 27.753259 0.852922 3135.448975 37.073528 2380.836426 132.267181 162.932648 14700 28.685709 0.900541 0.937286 0.995689 23.705419 0.885577 1 1 1 1 1 1 1 1 1 1 1 1 1 2970.780331 3098.375447 38.2980331 49.50350015 0.773642934 -0.111459437
12 5460 3650 2492.994385 59.558823 1995.605103 153.317001 184.033096 17900 28.685709 0.955873 0.950096 0.996216 16.260391 0.847213 2140.449951 30.529411 1382.23999 82.377266 170.194611 16000 28.685709 0.908663 0.961662 0.997833 25.983503 0.872373 1 1 1 1 1 1 1 1 1 1 1 1 1 2433.435562 2109.92054 31.3708135 33.71071503 0.930588789 -0.031242184
13 5720 3650 5281.851563 47.735294 4875.00293 160.429153 184.033096 17500 38.135933 0.952983 0.882011 0.996452 32.923265 0.847213 4099.729004 33.117645 3363.591309 116.232468 176.077789 16600 38.135933 0.948292 0.922356 0.99633 35.271806 0.861677 1 1 1 1 1 1 1 1 1 1 1 1 1 5234.116269 4066.611359 67.47599478 64.97324145 1.038519755 0.016414762
14 5970 3650 2990.523926 15.147058 2736.045166 49.9744 179.834061 16800 38.135933 0.935011 0.935715 0.998421 59.841118 0.854847 2366.178711 19.014706 1951.428101 79.103844 173.528442 15100 38.135933 0.943808 0.952591 0.997147 29.91231 0.866312 1 1 1 1 1 1 1 1 1 1 1 1 1 2975.376868 2347.164005 38.3572897 37.50121173 1.022828008 0.009802612
15 6210 3640 6704.813965 62.779411 5703.527832 133.179245 184.378693 19900 26.586088 0.959759 0.873764 0.99588 50.344286 0.846584 5626.775879 38.161766 4401.372559 89.023323 185.067963 18300 26.586088 0.947884 0.896957 0.997536 63.205637 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 6642.034554 5588.614113 85.62627689 89.29065063 0.958961283 -0.018198927
16 6470 3660 4115.680664 58.382355 3524.473877 151.683594 173.711777 18800 42.076111 0.930034 0.920586 0.995956 27.133328 0.865979 3666.517578 22.779411 2778.953857 70.509628 175.17157 17000 42.076111 0.926738 0.935036 0.997696 52.00024 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 4057.298309 3643.738167 52.30495951 58.21689333 0.898449857 -0.046506156
17 6720 3660 3288.567627 36.867645 3100.38623 89.552605 185.583237 18500 42.076111 0.954532 0.929123 0.99781 36.722188 0.844394 2595.188232 19.147058 2055.812012 70.739227 175.896927 15400 42.076111 0.929715 0.949722 0.997559 36.686692 0.862006 1 1 1 1 1 1 1 1 1 1 1 1 1 3251.699982 2576.041174 41.91952944 41.15803808 1.018501644 0.007961734
18 6960 3660 3837.456055 43.867645 2912.248535 100.81221 185.239883 18200 33.747887 0.939627 0.933548 0.997986 38.06539 0.845018 3672.970703 31.42647 2620.865479 88.011078 185.239883 17100 33.747887 0.945754 0.93824 0.997391 41.73305 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 3793.58841 3641.544233 48.90532396 58.18184031 0.840559936 -0.075431314
19 2720 3860 2136.425049 23.514706 2164.950195 63.941319 182.295258 16000 46.799042 0.961216 0.946487 0.998085 33.412277 0.850372 1818.879028 35.117645 1518.252808 148.45015 171.684311 12400 46.799042 0.908711 0.956474 0.996483 12.252457 0.869665 1 1 1 1 1 1 1 1 1 1 1 1 1 2112.910343 1783.761383 27.23873906 28.49959064 0.955758958 -0.019651623
20 2960 3860 3200.022705 42.911766 3514.358398 108.673378 180.010986 17700 39.480003 0.931814 0.912804 0.996452 29.446243 0.854526 2747.601318 25.397058 2673.785889 97.263016 167.935287 14800 39.480003 0.928297 0.932304 0.996735 28.249189 0.876481 1 1 1 1 1 1 1 1 1 1 1 1 1 3157.110939 2722.20426 40.70012784 43.49332135 0.935778795 -0.0288268

Total number of rows: 5184

Table truncated, full table size 1742 Kbytes.




Supplementary data files not provided
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