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Sample GSM16272 Query DataSets for GSM16272
Status Public on May 10, 2004
Title GC2_SARB35_LT2_2D643_1
Sample type genomic
 
Channel 1
Source name SARB35 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB35/LT2
User - PCheng
Date_of_Scan = Thu Feb 20 15:41:07 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1840 3320 8201.991211 134.544113 12775.07227 229.774094 192.321655 23000 6.547597 0.973153 0.582253 0.992096 35.695892 0.665431 9218.69043 79.779411 9362.636719 202.141586 180.716904 20000 6.547597 0.950608 0.73304 0.993843 45.605116 0.822027 1 1 1 0 1 1 1 1 1 1 1 1 1 8067.447098 9138.911019 93.87852673 52.57849967 1.785492688 0.251758076
2 2090 3320 1039.1875 113.044121 1122.319946 240.983337 193.476746 20800 6.547597 0.975926 0.96833 0.993301 4.312279 0.830042 2105.540283 44.882355 1790.983398 119.494896 181.068848 16100 6.547597 0.930106 0.956352 0.995682 17.620337 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 926.143379 2060.657928 10.77726013 11.85549372 0.909051988 -0.041411279
3 2340 3320 7112.995605 156.470581 7273.217285 292.546082 190.992981 21800 6.547597 0.966539 0.844299 0.991234 24.314103 0.834558 15023.70996 55.205883 14378.67969 138.917511 180.187729 20700 6.547597 0.95262 0.717789 0.996086 108.148425 0.811859 1 1 1 1 1 1 1 1 1 1 1 1 1 6956.525024 14968.50408 80.95105087 86.11764412 0.940005404 -0.02686965
4 2590 3320 2621.528564 118.411766 2565.555908 201.397964 191.990341 22700 6.547597 0.971751 0.942596 0.995171 13.016659 0.832745 6459.067871 69.294121 5556.354492 158.32341 181.945694 19100 6.547597 0.942409 0.883728 0.99688 40.79667 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 2503.116798 6389.77375 29.12803944 36.76200767 0.792340824 -0.101087967
5 2840 3310 4502.027344 125.764709 4452.60498 268.592957 191.658463 21800 8.694014 0.972906 0.906113 0.991692 16.761524 0.833348 10390.37305 66.073532 8893.611328 185.252579 177.697342 19300 8.694014 0.928818 0.809914 0.993973 56.087603 0.858732 1 1 1 1 1 1 1 1 1 1 1 1 1 4376.262635 10324.29952 50.92529071 59.3983438 0.857352031 -0.066840819
6 3090 3310 3343.142822 96.720589 3505.719971 157.070938 187.460449 23100 8.694014 0.965624 0.924599 0.995872 21.284286 0.840981 9013.277344 50.735294 7884.441406 127.212433 174.443207 19100 8.694014 0.929154 0.820076 0.995941 70.852173 0.864649 1 1 1 1 1 1 1 1 1 1 1 1 1 3246.422233 8962.54205 37.77766779 51.56380375 0.732639275 -0.135109804
7 3340 3320 4548.556152 180.647064 4805.728027 284.726685 193.969681 23200 6.547597 0.981144 0.893555 0.992416 15.975166 0.829146 10575.85645 66.779411 10423.12598 159.021057 183.860046 20900 6.547597 0.950789 0.765381 0.994911 66.506013 0.843587 1 1 1 1 1 1 1 1 1 1 1 1 1 4367.909088 10509.07703 50.82808292 60.46141627 0.840669737 -0.075374586
8 3590 3320 5557.772461 204.411758 5101.367188 253.94841 186.609512 21100 6.547597 0.965433 0.884277 0.993469 21.885439 0.842528 10234.18262 93.147057 10021.43848 318.411591 185.754669 21400 6.547597 0.959348 0.779892 0.990486 32.141363 0.844082 1 1 1 1 1 1 1 1 1 1 1 1 1 5353.360703 10141.03556 62.29549568 58.34397925 1.067727921 0.0284606
9 3840 3320 4711.409668 177.25 4764.317383 322.429962 191.990341 22700 6.547597 0.973358 0.898651 0.990921 14.612196 0.832745 10848.48535 97.794121 9943.239258 205.803452 187.120529 20400 6.547597 0.955192 0.795319 0.994392 52.712845 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 4534.159668 10750.69123 52.76269239 61.85148473 0.853054581 -0.06902318
10 4090 3320 5114.365723 210.058823 4558.899902 325.347565 184.723648 18600 6.547597 0.959275 0.890961 0.991241 15.719699 0.845957 10451.87988 88.838234 10547.20898 190.56778 187.460449 21700 6.547597 0.964166 0.773994 0.994591 54.845997 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 4904.3069 10363.04165 57.06998767 59.62123724 0.957209047 -0.018993205
11 4350 3320 5236.36084 241.25 4117.041992 308.537842 179.302277 18300 15.975443 0.949562 0.903008 0.991013 16.971535 0.855814 11700.14063 119.323532 11681.12305 217.731964 186.438858 22100 15.975443 0.966759 0.756386 0.993568 53.73644 0.837591 1 1 1 1 1 1 1 1 1 1 1 1 1 4995.11084 11580.81709 58.12664661 66.62741178 0.872413396 -0.059277674
12 4590 3320 3323.359131 107.941177 2616.794434 218.226151 186.609512 20600 6.547597 0.949663 0.938118 0.993759 15.228968 0.842528 7974.834961 58.308823 6515.69043 160.624084 183.166229 21200 6.547597 0.953111 0.861893 0.995125 49.649061 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 3215.417954 7916.526138 37.41688005 45.54580585 0.821521968 -0.085380819
13 4840 3320 6086.328613 56.294117 6273.274902 130.942963 191.990341 21900 6.547597 0.970723 0.859093 0.996841 46.480761 0.832745 13426.02832 71.5 12977.37891 144.461487 180.364288 21100 6.547597 0.950652 0.722565 0.996162 92.938461 0.815043 1 1 1 1 1 1 1 1 1 1 1 1 1 6030.034496 13354.52832 70.16975107 76.83202752 0.91328777 -0.039392358
14 5090 3320 3002.044189 368.029419 3069.150635 1773.981079 190.157852 20400 6.547597 0.968181 0.92495 0.948112 1.692264 0.45127 6436.625 146.602936 6019.681641 507.510681 181.595459 19200 6.547597 0.943472 0.864029 0.992615 12.682738 0.851645 1 1 1 1 1 0 1 1 1 1 1 1 1 2634.01477 6290.022064 30.65126093 36.18811063 0.846998099 -0.072117564
15 5340 3320 7496.191406 94.529411 6193.087891 225.918198 187.120529 21400 6.547597 0.960333 0.870247 0.993362 33.180999 0.841599 15116.01758 62.220589 12795.07031 161.99234 179.479706 22400 6.547597 0.952848 0.743851 0.994347 93.313163 0.829234 1 1 1 1 1 1 1 1 1 1 1 1 1 7401.661995 15053.79699 86.13097985 86.60835612 0.994488104 -0.002400408
16 5590 3310 5456.155273 75.970589 5195.684082 167.084122 191.658463 21900 8.694014 0.966367 0.88913 0.996536 32.655139 0.833348 14958.59668 55.941177 13281.91602 135.055527 178.768906 20600 8.694014 0.934226 0.734032 0.996162 110.758864 0.822688 1 1 1 1 1 1 1 1 1 1 1 1 1 5380.184684 14902.6555 62.60763852 85.73880037 0.730213605 -0.13655008
17 5840 3320 3449.598145 73.014709 3477.14917 176.171509 188.982483 20400 6.547597 0.96666 0.91671 0.996147 19.580908 0.838214 8922.691406 109.676468 8216.947266 239.56424 181.945694 20100 6.547597 0.952022 0.821228 0.992775 37.245506 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 3376.583436 8813.014938 39.29231571 50.70353591 0.774942319 -0.110730622
18 6090 3310 4776.801758 80.529411 4509.766113 160.240067 187.969162 22700 8.694014 0.960859 0.901764 0.9953 29.810283 0.840056 11956.26367 91.838234 10316.36914 178.684052 187.460449 21200 8.694014 0.958143 0.79863 0.994865 66.912875 0.840981 1 1 1 1 1 1 1 1 1 1 1 1 1 4696.272347 11864.42544 54.64915031 68.25908335 0.800613598 -0.096577038
19 1840 3560 1840.515259 133.382355 2145.477783 215.280029 185.754669 19600 8.694014 0.961315 0.941589 0.994011 8.549401 0.844082 4070.821777 45.441177 3756.036377 138.921692 178.768906 15700 8.694014 0.945298 0.919914 0.996864 29.302996 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 1707.132904 4025.3806 19.86540724 23.1590473 0.857781712 -0.066623217
20 2090 3560 2848.31665 142.852936 3371.546875 237.44751 186.950348 19900 8.694014 0.963426 0.911301 0.995125 11.995563 0.841908 6609.175293 72.647057 7694.065918 176.497574 184.033096 18800 8.694014 0.956882 0.816765 0.994637 37.446267 0.847213 1 1 1 1 1 1 1 1 1 1 1 1 1 2705.463714 6536.528236 31.48269143 37.60632388 0.837164822 -0.077189029

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided
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