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Sample GSM16273 Query DataSets for GSM16273
Status Public on May 10, 2004
Title GC2_SARB35_LT2_2D643_2
Sample type genomic
 
Channel 1
Source name SARB35 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB35/LT2
User - PCheng
Date_of_Scan = Thu Feb 20 15:41:07 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1780 22070 4914.035645 14.705882 3961.047852 54.41111 179.124664 16800 1.65426 0.944043 0.874771 0.998344 90.313093 0.856137 7466.462402 35.470589 5783.193359 109.32827 169.444855 17300 1.65426 0.920207 0.844223 0.996887 68.293977 0.873737 1 1 1 1 1 1 1 1 1 1 1 1 1 4899.329763 7430.991813 0.022011418 0.015923001 1.382366183 0.140623101
2 2030 22070 1369.671021 22.191177 1114.126221 70.06591 176.077789 15200 1.65426 0.926081 0.969589 0.997734 19.548323 0.861677 2758.622314 21.352942 2078.610107 91.669228 172.239624 14300 1.65426 0.937675 0.940575 0.996574 30.093221 0.868655 1 1 1 1 1 1 1 1 1 1 1 1 1 1347.479844 2737.269372 0.006053878 0.005865374 1.032138437 0.013737952
3 2290 22070 9371.625 42.588234 7591.692871 127.483597 184.895889 17600 8.367899 0.962583 0.830093 0.99617 73.512399 0.845644 16663.02148 36.705883 14732.69727 108.814789 181.945694 19100 8.367899 0.95628 0.677124 0.997635 153.131956 0.773856 1 1 1 1 1 1 1 1 1 0 1 1 1 9329.036766 16626.3156 0.041912943 0.035626582 1.176451416 0.070573997
4 2540 22070 3908.304443 28.352942 2757.377197 117.029243 170.568253 16100 8.367899 0.91278 0.934937 0.998016 33.395964 0.871694 6609.633789 26.529411 5527.73877 83.681068 184.378693 19400 8.367899 0.948768 0.881798 0.997643 78.986011 0.846584 1 1 1 1 1 1 1 1 1 1 1 1 1 3879.951501 6583.104378 0.017431616 0.014106162 1.235744733 0.091928768
5 2790 22070 6179.547852 51.176472 4888.927734 152.113663 179.656982 17700 8.367899 0.943574 0.896812 0.996056 40.624542 0.855169 11096.06348 60.25 9313.634766 216.593948 180.187729 18900 8.367899 0.944997 0.810524 0.995407 51.229795 0.854204 1 1 1 1 1 1 1 1 1 1 1 1 1 6128.37138 11035.81348 0.027533183 0.023647351 1.164324232 0.066073936
6 3040 22070 4810.244141 25.57353 3578.603027 72.048973 169.256897 16400 8.367899 0.931969 0.92099 0.998055 66.763535 0.874078 9044.360352 61.779411 7522.846191 144.77948 178.055252 18600 8.367899 0.945007 0.8405 0.995438 62.469905 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 4784.670611 8982.580941 0.021496284 0.019247719 1.116822405 0.047984118
7 3290 22070 4943.743164 46.75 4259.899414 144.300003 187.120529 18300 8.367899 0.954524 0.903633 0.996185 34.260174 0.841599 9407.253906 40.588234 8719.884766 133.870987 177.159134 19300 8.367899 0.937236 0.812592 0.995438 70.271043 0.859711 1 1 1 1 1 1 1 1 1 1 1 1 1 4896.993164 9366.665672 0.02200092 0.02007073 1.096169441 0.039877691
8 3540 22070 6047.075684 45.970589 4852.331543 125.940163 179.479706 17200 8.367899 0.934091 0.889771 0.996559 48.015467 0.855491 10544.44434 36.044117 9939.926758 94.328804 179.656982 19600 8.367899 0.949554 0.788879 0.997147 111.783929 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 6001.105095 10508.40022 0.026961409 0.022517219 1.197368531 0.07822784
9 3790 22070 5237.564941 44.632355 4159.4375 117.716949 175.896927 17000 8.367899 0.953417 0.904716 0.996628 44.49287 0.862006 8986.198242 75.661766 7428.207031 205.249802 176.619293 18200 8.367899 0.952816 0.844116 0.9935 43.781763 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 5192.932586 8910.536476 0.023330499 0.019093344 1.221917949 0.087042044
10 4040 22070 4702.594238 16 4094.654053 55.925056 174.62558 17000 8.367899 0.945651 0.894814 0.998276 84.087429 0.864317 9177.982422 59.64706 7527.541504 202.066177 178.41243 17200 8.367899 0.924117 0.815033 0.99543 45.420676 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 4686.594238 9118.335362 0.021055653 0.019538612 1.077643231 0.032475005
11 4290 22070 4681.527344 26.705883 3849.322266 77.295143 177.518127 16500 8.367899 0.930081 0.911545 0.997757 60.566902 0.859058 10354.13672 65.014709 9103.661133 175.788925 179.302277 18300 8.367899 0.936448 0.802574 0.995033 58.900962 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 4654.821461 10289.12201 0.020912906 0.022047353 0.948544965 -0.022942077
12 4540 22070 3431.08374 38.132355 2356.393311 102.670883 176.619293 17900 8.367899 0.956636 0.942917 0.997566 33.418274 0.860692 6962.182617 48.441177 5336.519531 113.017151 175.896927 19700 8.367899 0.944447 0.87854 0.997116 61.602886 0.862006 1 1 1 1 1 1 1 1 1 1 1 1 1 3392.951385 6913.74144 0.015243651 0.014814646 1.028958159 0.012397715
13 4790 22070 7910.077148 37 6787.973145 100.147804 182.295258 18100 8.367899 0.949118 0.844666 0.997002 78.98403 0.850372 14331.34863 33.455883 13345.31055 122.859756 178.946869 19500 8.367899 0.950461 0.715088 0.997444 116.648031 0.810059 1 1 1 1 1 1 1 1 1 1 1 1 1 7873.077148 14297.89275 0.035371694 0.030637278 1.154531228 0.062405684
14 5040 22070 3502.824219 47.264706 2933.282227 129.349533 181.42009 16500 8.367899 0.943247 0.928505 0.996567 27.0803 0.851963 5659.152832 38.955883 5410.754395 125.420898 177.159134 19600 8.367899 0.920091 0.88102 0.996147 45.121291 0.859711 1 1 1 1 1 1 1 1 1 1 1 1 1 3455.559513 5620.196949 0.015524933 0.012042861 1.289139911 0.110300054
15 5290 22070 11021.21875 60.558823 8556.535156 135.27356 183.860046 20100 8.367899 0.941208 0.816612 0.995636 81.473562 0.847527 22425.93945 21.07353 18752.03516 73.702774 183.339935 21800 8.367899 0.938597 0.627625 0.997513 304.275378 0.717285 1 1 1 1 1 1 1 1 1 0 1 1 1 10960.65993 22404.86592 0.049243403 0.04800876 1.02571703 0.011027566
16 5540 22070 9335.666992 14.338235 7502.400391 48.189491 179.834061 18300 8.367899 0.952266 0.846672 0.998589 193.728274 0.854847 20780.35156 38.235294 18457.76953 126.170471 183.166229 20200 8.367899 0.95085 0.62751 0.997726 164.700594 0.717154 1 1 1 1 1 1 1 1 1 0 1 1 1 9321.328757 20742.11627 0.041878313 0.044445849 0.942232268 -0.025842027
17 5790 22080 5704.663086 77.014709 4874.033203 238.544312 182.469788 18100 12.848549 0.957906 0.883553 0.993195 23.91448 0.850055 11546.29395 51.455883 10531.81445 136.111725 175.715866 20100 12.848549 0.94948 0.778885 0.995506 84.829532 0.85259 1 1 1 1 1 1 1 1 1 1 1 1 1 5627.648377 11494.83806 0.025283565 0.024630941 1.026496113 0.011357309
18 6040 22070 8913.469727 27.632353 6586.952637 72.168312 176.799423 18100 8.367899 0.92596 0.859528 0.997566 123.509467 0.860365 17307.09375 34.308823 14408.02637 106.079277 179.479706 20200 8.367899 0.955013 0.707504 0.996239 163.152448 0.805003 1 1 1 1 1 1 1 1 1 1 1 1 1 8885.837374 17272.78493 0.039921763 0.037011825 1.078621834 0.032869207
19 1770 22320 2845.69873 49.838234 2743.945068 141.661423 182.469788 16600 11.63836 0.95403 0.936722 0.994888 20.088029 0.850055 5295.925781 18.455883 5338.11084 61.74247 176.258484 16200 11.63836 0.945212 0.889603 0.997986 85.77444 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 2795.860496 5277.469898 0.012561076 0.011308471 1.110766939 0.045622945
20 2040 22320 5099.431152 57.455883 5136.041016 160.253845 178.590759 16700 8.367899 0.92809 0.876434 0.995468 31.82096 0.857108 10499.18848 24.588236 10380.53809 112.459641 166.984879 15900 8.367899 0.912968 0.761887 0.995476 93.359613 0.841258 1 1 1 1 1 1 1 1 1 1 1 1 1 5041.975269 10474.60024 0.022652287 0.022444793 1.009244673 0.003996466

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided
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