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Sample GSM16284 Query DataSets for GSM16284
Status Public on May 10, 2004
Title GC2_020420_LT2_2D647_1
Sample type genomic
 
Channel 1
Source name 020420 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Oranienburg; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Oranienburg; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 020420/LT2
User - PCheng
Date_of_Scan = Thu Mar 06 18:36:52 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1950 3530 6518.264648 284.264709 5963.907715 429.796295 190.157852 20800 15.560995 0.963389 0.854721 0.987694 15.16594 0.836077 2825.22876 9.720589 2003.401367 53.792538 172.793152 15300 15.560995 0.931576 0.946434 0.99865 52.520831 0.867649 1 1 1 1 1 1 1 1 1 1 1 1 1 6233.999939 2815.508171 100.780399 99.12947644 1.016654204 0.007173261
2 2200 3530 2067.19751 409.823517 1671.2854 628.729431 186.779999 16700 15.560995 0.965805 0.953789 0.985809 3.287897 0.810889 1109.008545 26.67647 884.47345 94.128754 163.906555 11700 15.560995 0.921242 0.976898 0.996567 11.781825 0.883806 1 1 1 1 1 1 1 1 1 1 1 1 1 1657.373993 1082.332075 26.79352164 38.10715701 0.70310996 -0.15297675
3 2450 3530 7553.995605 315.161774 7636.509766 546.687073 187.969162 21600 15.560995 0.957701 0.82769 0.987595 13.817769 0.840056 5286.398926 37.411766 3750.876953 130.802368 163.712234 15300 15.560995 0.929151 0.916252 0.995087 40.415162 0.88416 1 1 1 1 1 1 1 1 1 1 1 1 1 7238.833831 5248.98716 117.0247945 184.808325 0.633222527 -0.198443644
4 2690 3520 3025.274414 152.544113 2796.733154 294.933044 187.120529 20400 4.599808 0.956667 0.928856 0.99025 10.257496 0.841599 2437.126709 10.441176 1622.540405 58.349277 169.444855 14200 4.599808 0.910134 0.956429 0.998604 41.767899 0.873737 1 1 1 1 1 1 1 1 1 1 1 1 1 2872.730301 2426.685533 46.44127505 85.43966196 0.5435564 -0.264755387
5 2950 3530 5554.612793 326.323517 5708.36084 704.645752 188.138428 22200 15.560995 0.966585 0.870163 0.980568 7.882844 0.839748 3996.547363 35.882355 2845.258301 133.489624 172.977264 14800 15.560995 0.928684 0.933113 0.996658 29.939011 0.867314 1 1 1 1 1 1 1 1 1 1 1 1 1 5228.289276 3960.665008 84.52182937 139.4485914 0.606114615 -0.217445244
6 3200 3530 4511.205566 305.029419 4371.796875 631.996216 193.476746 21400 15.560995 0.975763 0.895584 0.979057 7.138026 0.830042 3285.883545 30.720589 2356.075928 116.478409 169.256897 14600 15.560995 0.891725 0.939491 0.995872 28.210237 0.874078 1 1 1 1 1 1 1 1 1 1 1 1 1 4206.176147 3255.162956 67.99809341 114.6090084 0.593304962 -0.226722019
7 3440 3530 5087.995117 354.264709 4893.40918 706.363586 186.950348 19900 8.212928 0.961321 0.87928 0.981804 7.203082 0.841908 3546.904053 10.867647 2609.441162 44.927105 169.632599 14600 8.212928 0.914513 0.931198 0.998817 78.947977 0.873395 1 1 1 1 1 1 1 1 1 1 1 1 1 4733.730408 3536.036406 76.52666727 124.498107 0.614681372 -0.211349948
8 3710 3530 4610.733887 276.102936 5100.073242 479.436615 192.487091 21800 24.836203 0.972194 0.871246 0.984879 9.616983 0.831842 3136.041016 16.205883 2397.935303 55.47934 174.260635 14600 24.836203 0.944485 0.940582 0.998215 56.526286 0.864981 1 1 1 1 1 1 1 1 1 1 1 1 1 4334.630951 3119.835133 70.07472584 109.8443352 0.637945741 -0.195216258
9 3950 3520 3024.517334 435.661774 2835.145996 860.181641 190.492355 20100 13.994664 0.955386 0.920876 0.974869 3.516138 0.818714 2840.77124 25.985294 2263.705566 77.633369 167.745636 15300 13.994664 0.891123 0.946701 0.997513 36.592142 0.876826 1 1 1 1 1 1 1 1 1 1 1 1 1 2588.85556 2814.785946 41.85208514 99.10404807 0.422304497 -0.374374294
10 4200 3520 3841.391602 476.485291 3495.544678 686.654419 188.645309 18900 13.994664 0.964948 0.904709 0.984917 5.594359 0.838827 2789.421875 13.544118 2047.909058 63.048058 165.645157 14700 13.994664 0.898711 0.945526 0.998619 44.242788 0.880645 1 1 1 1 1 1 1 1 1 1 1 1 1 3364.906311 2775.877757 54.39791527 97.73415384 0.55659064 -0.254464101
11 4450 3530 3682.97583 309.367645 3865.28418 605.209351 189.822784 20700 15.560995 0.968901 0.9002 0.980988 6.085458 0.836686 3324.408691 12.588235 2196.193359 48.514725 149.90892 13700 15.560995 0.862699 0.944489 0.998741 68.523705 0.908466 1 1 1 1 1 1 1 1 1 1 1 1 1 3373.608185 3311.820456 54.53859194 116.6038271 0.467725574 -0.330008883
12 4700 3530 2835.366699 346.558838 2426.383057 579.5177 190.992981 21000 15.560995 0.964558 0.938988 0.984604 4.892632 0.834558 2069.053467 18 1516.114502 62.589638 178.055252 16800 15.560995 0.932291 0.959679 0.998131 33.057444 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 2488.807861 2051.053467 40.23468906 72.21426612 0.557157072 -0.254022353
13 4950 3530 5507.445801 422.235291 5071.563965 665.997864 188.476501 19300 15.560995 0.953897 0.865593 0.982956 8.269465 0.839134 3916.229736 6.323529 2854.655029 26.728844 170.754776 14800 15.560995 0.926879 0.923492 0.999069 146.51699 0.871355 1 1 1 1 1 1 1 1 1 1 1 1 1 5085.21051 3909.906207 82.20878232 137.6614564 0.597180827 -0.223894144
14 5200 3540 3062.325684 272.161774 3159.341064 474.906372 190.992981 21500 22.100645 0.980691 0.912018 0.987846 6.448272 0.834558 2103.963623 19.441177 1433.690552 81.144684 164.681534 13700 22.100645 0.915541 0.960907 0.99733 25.928545 0.882397 1 1 1 1 1 1 1 1 1 1 1 1 1 2790.16391 2084.522446 45.10648617 73.39265459 0.614591289 -0.2114136
15 5450 3520 7257.464844 394.823517 6710.635742 891.734131 191.49231 22800 13.994664 0.968882 0.839661 0.985283 8.138597 0.83365 6031.72998 17.67647 4158.995117 53.544636 175.534622 17400 13.994664 0.892451 0.905251 0.998451 112.648632 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 6862.641327 6014.05351 110.9431725 211.7450703 0.523946897 -0.280712727
16 5700 3530 5162.288574 393.382355 4776.04248 606.892029 190.826248 21500 15.560995 0.970533 0.887001 0.985779 8.506107 0.834861 3711.746582 54.764706 2457.980957 204.310425 155.126511 14600 15.560995 0.922802 0.940186 0.992111 18.167191 0.89977 1 1 1 1 1 1 1 1 1 1 1 1 1 4768.906219 3656.981876 77.09532821 128.7564009 0.598768898 -0.222740767
17 5950 3530 3407.463135 356.073517 3232.316406 513.204712 185.411636 19000 15.560995 0.969412 0.905281 0.985733 6.639579 0.844706 1957.10376 14.558824 1510.119873 41.537388 168.124725 13500 15.560995 0.917744 0.957977 0.998962 47.116679 0.876137 1 1 1 1 1 1 1 1 1 1 1 1 1 3051.389618 1942.544936 49.32952616 68.39385673 0.721256682 -0.14191015
18 6200 3530 4428.314941 352.485291 3811.358154 582.368591 189.487106 21600 15.560995 0.963481 0.890038 0.982208 7.603973 0.837296 3572.100586 16.17647 2299.849609 60.838406 167.1754 15900 15.560995 0.913805 0.943726 0.997932 58.714566 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 4075.82965 3555.924116 65.89087941 125.198321 0.526292037 -0.278773201
19 1950 3760 2995.177979 280.352936 3315.925293 560.154053 188.476501 20800 18.696434 0.962073 0.905891 0.985565 5.347061 0.839134 1892.084595 40.838234 1469.951172 146.762024 175.17157 13000 18.696434 0.911459 0.961525 0.995369 12.892195 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 2714.825043 1851.246361 43.88853924 65.17938197 0.673350037 -0.171759112
20 2200 3760 3355.035156 411.411774 3902.674805 734.872986 187.120529 19900 18.696434 0.959726 0.895332 0.97422 4.565463 0.841599 2911.175293 7.25 2725.647217 32.06913 160.967178 13700 18.696434 0.897153 0.930885 0.998772 90.778119 0.889151 1 1 1 1 1 1 1 1 1 1 1 1 1 2943.623382 2903.925293 47.58735029 102.2424999 0.465436099 -0.332139936

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided
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