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Sample GSM16413 Query DataSets for GSM16413
Status Public on May 10, 2004
Title GC2_022007_LT2_2D658_2
Sample type genomic
 
Channel 1
Source name 022007 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
 
Description genomic comparison 022007/LT2
User - PCheng
Date_of_Scan = Mon Mar 17 10:16:16 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1780 21790 3824.283447 161.205887 3593.960205 334.4823 186.438858 18700 8.154374 0.959602 0.89769 0.991875 11.43344 0.842838 2048.132568 20.882353 1683.522949 77.007179 165.260376 15100 8.154374 0.917961 0.948631 0.997826 26.596644 0.881345 1 1 1 1 1 1 1 1 1 1 1 1 1 3663.07756 2027.250215 0.021593881 0.016160803 1.336188643 0.125867776
2 2030 21790 1415.5 88.176468 1362.001587 235.483749 186.268051 16600 8.154374 0.965203 0.9655 0.992477 6.011031 0.843149 710.854675 18.720589 611.346497 91.287613 177.876389 11700 8.154374 0.939034 0.982201 0.996605 7.786978 0.858407 1 1 1 1 1 1 1 1 1 1 1 1 1 1327.323532 692.134086 0.007824586 0.005517544 1.418128462 0.151715573
3 2280 21790 6808.330078 161.191177 6492.023438 439.943756 187.460449 19700 8.154374 0.955955 0.831841 0.991302 15.475456 0.840981 4096.114746 31.911764 2662.589844 126.074928 166.412033 14800 8.154374 0.880203 0.928375 0.995956 32.489527 0.879251 1 1 1 1 1 1 1 1 1 1 1 1 1 6647.138901 4064.202982 0.039184954 0.032398952 1.209451287 0.082588381
4 2530 21790 3238.892578 133.132355 2729.459961 317.281158 189.319046 18600 8.154374 0.966282 0.927124 0.990433 10.208273 0.837602 2119.978516 6.544117 1293.246948 33.843113 165.837204 13900 8.154374 0.861876 0.965164 0.999176 62.641357 0.880296 1 1 1 1 1 1 1 1 1 1 1 1 1 3105.760223 2113.434399 0.018308489 0.016847844 1.086696251 0.036108169
5 2780 21790 6645.094238 216.279419 6310.881348 414.097107 189.319046 20200 8.154374 0.962751 0.851242 0.987503 16.047188 0.837602 4194.929688 21.147058 3017.657715 65.245407 167.935287 15600 8.154374 0.936887 0.929779 0.998024 64.294636 0.876481 1 1 1 1 1 1 1 1 1 1 1 1 1 6428.814819 4173.78263 0.037897931 0.033272497 1.139016738 0.056530106
6 3030 21790 5293.129883 62.794117 4631.435547 185.651947 182.12056 18500 8.154374 0.951683 0.891403 0.993492 28.511039 0.85069 3466.251709 20.25 2322.00708 75.650688 175.17157 14700 8.154374 0.926005 0.942169 0.997543 45.81917 0.863324 1 1 1 1 1 1 1 1 1 1 1 1 1 5230.335766 3446.001709 0.030832884 0.027470784 1.122388216 0.050143098
7 3280 21790 4354.758789 208.5 4296.965332 374.668854 189.150833 19900 8.154374 0.965816 0.895164 0.991791 11.622954 0.837908 2794.855225 14.338235 2121.573486 69.432587 168.31395 15200 8.154374 0.906603 0.946411 0.997299 40.252788 0.875793 1 1 1 1 1 1 1 1 1 1 1 1 1 4146.258789 2780.51699 0.024442239 0.022165683 1.102706334 0.042459869
8 3530 21790 5008.230957 221.661758 4912.691406 383.930328 187.120529 19500 8.154374 0.963138 0.878494 0.989708 13.044635 0.841599 2734.735107 14.220589 2016.054565 74.490074 178.41243 15100 8.154374 0.948093 0.947151 0.998367 36.712745 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 4786.569199 2720.514518 0.028216876 0.021687356 1.301074937 0.114302311
9 3770 21790 2340.005615 130.705887 2010.652222 310.213074 188.307541 17700 4.951392 0.959875 0.945435 0.991386 7.54322 0.839441 2995.931885 27.794117 2037.332153 72.299248 166.029037 14700 4.951392 0.883259 0.94632 0.997871 41.43794 0.879947 1 1 1 1 1 1 1 1 1 1 1 1 1 2209.299728 2968.137768 0.013023845 0.023661356 0.550426838 -0.259300399
10 4030 21790 2946.644043 145.661758 2856.223877 371.410126 191.49231 19100 8.154374 0.969814 0.926949 0.988365 7.933666 0.83365 2479.368164 31.455883 1976.652588 101.609352 165.837204 14400 8.154374 0.89175 0.944321 0.997932 24.400984 0.880296 1 1 1 1 1 1 1 1 1 1 1 1 1 2800.982285 2447.912281 0.01651182 0.01951423 0.846142537 -0.072556472
11 4280 21790 2757.564453 109.764709 2609.446289 276.539185 184.033096 18600 8.154374 0.952578 0.934555 0.991272 9.971695 0.847213 2352.967041 40.073528 1848.393799 113.979355 172.793152 15200 8.154374 0.908449 0.953674 0.996132 20.6438 0.867649 1 1 1 1 1 1 1 1 1 1 1 1 1 2647.799744 2312.893513 0.015608807 0.018437889 0.846561502 -0.072341485
12 4530 21790 3843.151611 181.823532 3228.592041 391.835327 182.818344 19800 8.154374 0.971915 0.913933 0.987595 9.808078 0.849421 1761.597534 3.985294 1198.290649 28.160252 170.568253 16400 8.154374 0.911248 0.966484 0.999809 62.556172 0.871694 1 1 1 1 1 1 1 1 1 1 1 1 1 3661.328079 1757.61224 0.021583568 0.014011307 1.540439318 0.187644595
13 4780 21790 5471.774902 130.882355 5551.05957 292.615753 188.307541 20900 8.154374 0.964093 0.860443 0.991409 18.699523 0.839441 3713.169678 10.588235 2852.663574 43.515388 170.194611 16500 8.154374 0.912976 0.92672 0.998985 85.330036 0.872373 1 1 1 1 1 1 1 1 1 1 1 1 1 5340.892547 3702.581443 0.031484618 0.029516183 1.066690034 0.028038237
14 5030 21790 3054.026123 109.205879 2933.260498 230.00795 188.138428 19100 8.154374 0.967725 0.918777 0.993118 13.277916 0.839748 1640.5 17.661764 1293.454102 88.029778 179.479706 15800 8.154374 0.958977 0.96611 0.996849 18.635739 0.855491 1 1 1 1 1 1 1 1 1 1 1 1 1 2944.820244 1622.838236 0.017359746 0.012936917 1.341876587 0.127712575
15 5270 21790 5153.480957 89.705879 4202.789063 228.433014 183.339935 20800 4.951392 0.966395 0.894203 0.992996 22.560141 0.848473 3409.10791 9.279411 2299.100586 50.991905 172.424332 17600 4.951392 0.920778 0.93486 0.998459 66.855865 0.868319 1 1 1 1 1 1 1 1 1 1 1 1 1 5063.775078 3399.828499 0.029851007 0.027102701 1.101403403 0.041946414
16 5530 21790 3946.23999 149.25 3500.16748 338.549591 180.89296 20000 8.154374 0.944396 0.904579 0.99054 11.656313 0.852922 2257.109863 33.25 1501.155518 105.037498 169.068726 16400 8.154374 0.897188 0.957069 0.996437 21.48861 0.874421 1 1 1 1 1 1 1 1 1 1 1 1 1 3796.98999 2223.859863 0.022383296 0.017728132 1.262586242 0.101261053
17 5770 21790 2746.803223 208.926468 2670.817871 481.860596 176.077789 19300 4.951392 0.919199 0.927574 0.984131 5.700411 0.861677 1482.890381 25.735294 1207.463501 98.721016 176.799423 15500 4.951392 0.949057 0.968758 0.997139 15.02102 0.860365 1 1 1 1 1 1 1 1 1 1 1 1 1 2537.876755 1457.155087 0.01496081 0.011616127 1.287934475 0.109893768
18 6020 21790 519.130432 105.5 791.57135 368.671631 184.551254 9200 4.951392 0.956862 0.968979 0.991615 1.408111 0.375496 294.58139 14.573529 358.525696 61.203922 164.29451 4300 4.951392 0.895481 0.985992 0.997963 4.813113 0.853224 1 1 1 1 1 0 1 1 1 1 1 1 1 413.630432 280.007861 0.002438356 0.002232162 1.092373804 0.038371277
19 1780 22030 3756.674561 140.161758 4249.416016 439.110046 185.583237 16900 9.286808 0.956551 0.893143 0.983292 8.555201 0.844394 1244.96582 14.235294 1065.335938 75.350349 156.556274 11700 9.286808 0.87285 0.972733 0.996902 16.522363 0.89717 1 1 1 1 1 1 1 1 1 1 1 1 1 3616.512803 1230.730526 0.021319381 0.009811119 2.172981613 0.337056051
20 2040 22030 4503.333496 133.455887 4914.53125 346.119537 186.609512 18300 18.116907 0.95752 0.873779 0.988853 13.01092 0.842528 2292.977783 22.970589 2018.692383 101.125748 160.372833 13500 18.116907 0.882642 0.954933 0.995758 22.67452 0.890231 1 1 1 1 1 1 1 1 1 1 1 1 1 4369.877609 2270.007194 0.025760475 0.018096009 1.423544531 0.153371057

Total number of rows: 5184

Table truncated, full table size 1738 Kbytes.




Supplementary data files not provided
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