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Sample GSM16414 Query DataSets for GSM16414
Status Public on May 10, 2004
Title GC2_022007_LT2_2D658_3
Sample type genomic
 
Channel 1
Source name 022007 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Typhimurium; Salmonella enterica subsp. enterica serovar Java
Extracted molecule genomic DNA
 
 
Description genomic comparison 022007/LT2
User - PCheng
Date_of_Scan = Mon Mar 17 10:16:16 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) [email protected]
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1710 40540 2798.779541 120.823532 2550.447998 322.646515 189.655014 19500 8.42688 0.963344 0.928764 0.992012 8.674445 0.836991 1085.802979 8.455882 936.106384 40.745087 165.260376 13200 8.42688 0.921483 0.97229 0.998375 26.648685 0.881345 1 1 1 1 1 1 1 1 1 1 1 1 1 2677.956009 1077.347097 0.015365905 0.009444378 1.626989668 0.211384795
2 1960 40530 1154.759521 114.911766 1119.097778 288.061279 186.268051 15800 8.241745 0.954562 0.971619 0.99128 4.008729 0.833575 389.914642 10.397058 365.409729 62.262119 161.559326 8200 8.241745 0.887096 0.989151 0.998268 6.26247 0.878971 1 1 1 1 1 1 1 1 1 1 1 1 1 1039.847755 379.517584 0.005966566 0.003326976 1.793390472 0.253674858
3 2210 40540 5694.152832 177.191177 5247.79248 369.323792 183.860046 19000 8.42688 0.965724 0.876335 0.987564 15.41778 0.847527 2879.844971 9.367647 1848.009399 62.259186 158.977386 14200 8.42688 0.90384 0.949242 0.999207 46.255744 0.892768 1 1 1 1 1 1 1 1 1 1 1 1 1 5516.961655 2870.477324 0.031655901 0.025163545 1.258006391 0.099682847
4 2460 40540 3002.443848 63.544117 2585.634766 196.151672 183.513474 17800 8.42688 0.943784 0.936005 0.995636 15.306746 0.848157 1471.776978 16.264706 1040.210815 67.689949 167.365692 14800 8.42688 0.915466 0.973625 0.997513 21.742918 0.877517 1 1 1 1 1 1 1 1 1 1 1 1 1 2938.899731 1455.512272 0.01686318 0.012759498 1.321617863 0.1211059
5 2710 40540 4606.938965 162.647064 4178.944824 400.768433 184.378693 19700 8.42688 0.944191 0.893875 0.989944 11.495264 0.846584 2634.790527 23.058823 1732.98291 85.004807 171.127197 14800 8.42688 0.89783 0.95504 0.99691 30.995783 0.870678 1 1 1 1 1 1 1 1 1 1 1 1 1 4444.291901 2611.731704 0.025501004 0.022895296 1.113809754 0.046811017
6 2960 40540 3347.020996 247.720581 3012.297852 615.524719 186.779999 19100 8.42688 0.958471 0.925926 0.985146 5.437671 0.842218 2137.014404 20.82353 1377.514648 83.652969 167.555771 13800 8.42688 0.897366 0.961143 0.997353 25.546187 0.877171 1 1 1 1 1 1 1 1 1 1 1 1 1 3099.300415 2116.190874 0.017783547 0.018551223 0.958618574 -0.018354161
7 3210 40540 4086.898438 195.705887 3875.283447 398.918365 188.813965 18700 8.42688 0.955481 0.896858 0.988029 10.244949 0.83852 2238.959717 16.382353 1737.36438 52.310505 172.608841 14900 8.42688 0.93305 0.950546 0.99823 42.80134 0.867984 1 1 1 1 1 1 1 1 1 1 1 1 1 3891.192551 2222.577364 0.022327363 0.019483842 1.145942528 0.059162837
8 3460 40540 4087.121826 121.602943 3905.401611 276.504211 184.551254 19700 8.42688 0.957418 0.903175 0.99292 14.781409 0.84627 2254.398682 3.264706 1614.93335 15.430748 168.880341 14300 8.42688 0.920152 0.954399 0.999535 146.097823 0.874763 1 1 1 1 1 1 1 1 1 1 1 1 1 3965.518883 2251.133976 0.022753842 0.019734178 1.153016923 0.061835682
9 3710 40540 2296.594482 144.617645 2013.416626 317.820648 185.754669 18000 8.42688 0.965575 0.947479 0.990044 7.226071 0.844082 2571.320068 19.029411 1799.384521 68.258942 174.077881 15000 8.42688 0.932042 0.954636 0.997665 37.670084 0.865313 1 1 1 1 1 1 1 1 1 1 1 1 1 2151.976837 2552.290657 0.012347877 0.022374217 0.551879757 -0.258155536
10 3960 40540 3064.478516 186.647064 2956.623291 437.628906 191.49231 18600 8.42688 0.969489 0.915695 0.987434 7.002459 0.83365 1975.160034 13.676471 1498.132813 57.47094 175.534622 15000 8.42688 0.894316 0.961395 0.99881 34.367979 0.862664 1 1 1 1 1 1 1 1 1 1 1 1 1 2877.831452 1961.483563 0.016512775 0.017195008 0.960323781 -0.017582316
11 4210 40540 3028.474121 153.426468 2719.955566 368.660309 184.205978 19400 8.42688 0.965209 0.932259 0.989029 8.214809 0.846898 2508.419922 15.808824 1755.255493 53.075348 157.771469 15000 8.42688 0.893015 0.954597 0.998169 47.261488 0.894961 1 1 1 1 1 1 1 1 1 1 1 1 1 2875.047653 2492.611098 0.016496802 0.021851046 0.754966229 -0.122072475
12 4460 40540 3980.199951 218.867645 3232.810791 415.394958 186.438858 20500 8.42688 0.958347 0.917542 0.988098 9.581724 0.842838 2013.532104 24.044117 1268.24646 72.102425 167.1754 15600 8.42688 0.921532 0.963524 0.997612 27.925997 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 3761.332306 1989.487987 0.021582235 0.017440504 1.237477711 0.092537385
13 4710 40540 6613.128418 196.911758 6247.974121 457.865723 189.487106 21000 8.42688 0.962608 0.858261 0.985893 14.44338 0.837296 4274.694336 29.867647 2820.695068 116.020828 169.068726 15700 8.42688 0.884952 0.929276 0.997498 36.844198 0.874421 1 1 1 1 1 1 1 1 1 1 1 1 1 6416.21666 4244.826689 0.036815756 0.037211542 0.9893639 -0.00464394
14 4950 40540 4014.092773 125.529411 3719.155029 336.731628 187.630173 19400 6.138187 0.960145 0.9039 0.989082 11.920748 0.840672 2401.9104 16.92647 1649.491089 77.750908 173.528442 14500 6.138187 0.923968 0.953842 0.997185 30.892378 0.866312 1 1 1 1 1 1 1 1 1 1 1 1 1 3888.563362 2384.98393 0.022312277 0.020907551 1.067187489 0.028240725
15 5210 40540 5692.171387 227.338242 4806.114258 428.586243 185.583237 21000 8.42688 0.952392 0.87677 0.987534 13.281274 0.844394 3808.029785 22.602942 2168.960693 117.7024 159.776276 16800 8.42688 0.913362 0.938774 0.998703 32.353034 0.891316 1 1 1 1 1 1 1 1 1 1 1 1 1 5464.833145 3785.426843 0.031356791 0.033184293 0.944928725 -0.024600949
16 5450 40540 4471.370117 180.073532 3897.281494 386.004578 188.138428 20800 6.138187 0.953727 0.89901 0.991241 11.583723 0.839748 2488.108643 14.308824 1885.740967 48.59742 178.946869 17500 6.138187 0.947002 0.944756 0.998672 51.198369 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 4291.296585 2473.799819 0.024623129 0.02168614 1.135431608 0.05516098
17 5700 40540 3630.328613 251.823532 3814.64624 565.553772 192.156067 21600 6.138187 0.975188 0.890991 0.985321 6.419069 0.832444 2515.255127 20.25 1963.893555 59.128338 160.571182 14900 6.138187 0.890077 0.946655 0.998085 42.538911 0.889871 1 1 1 1 1 1 1 1 1 1 1 1 1 3378.505081 2495.005127 0.019385602 0.021872033 0.886319157 -0.052409864
18 5960 40540 658.054688 178.176468 782.679321 310.550934 190.992981 12800 8.42688 0.964816 0.970444 0.992363 2.118991 0.565064 561.085693 24.92647 1110.975342 99.852325 151.38797 3500 8.42688 0.921742 0.956596 0.997421 5.619155 0.852169 1 1 1 1 1 0 1 1 1 1 1 1 1 479.87822 536.159223 0.002753504 0.004700147 0.585833578 -0.23222574
19 1710 40790 2436.548096 206.544113 2936.004639 468.791046 182.469788 17700 8.42688 0.958301 0.924316 0.988083 5.197514 0.850055 808.673096 17.42647 735.515198 74.440666 167.1754 10400 8.42688 0.891107 0.980026 0.996986 10.863324 0.877863 1 1 1 1 1 1 1 1 1 1 1 1 1 2230.003983 791.246626 0.012795591 0.006936327 1.844721332 0.26593077
20 1970 40790 3836.631592 118.102943 4052.366211 277.714935 189.822784 17100 17.445551 0.962358 0.898178 0.991219 13.814999 0.836686 1874.95166 16.691177 1543.922852 81.657501 158.977386 12400 17.445551 0.891916 0.960632 0.997734 22.961169 0.892768 1 1 1 1 1 1 1 1 1 1 1 1 1 3718.528649 1858.260483 0.021336631 0.016290121 1.309789615 0.117201543

Total number of rows: 5184

Table truncated, full table size 1737 Kbytes.




Supplementary data files not provided
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